PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7910_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 705aa    MW: 79081.3 Da    PI: 9.6222
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7910_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.33.5e-081459245
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                      +WT+  d+++  a +++ ++   +W+ +ar +g g++ +++k r+ 
       RrC7910_p1 14 SSWTAKQDKQFEMALAKFEKDtpdRWHNVARAVG-GKSVEEVKRRYE 59
                     58********************************.**********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.8481166IPR017884SANT domain
SMARTSM007177.4E-91264IPR001005SANT/Myb domain
PfamPF002492.9E-61458IPR001005SANT/Myb domain
SuperFamilySSF466894.61E-111469IPR009057Homeodomain-like
CDDcd001671.05E-51662No hitNo description
PfamPF120371.4E-102126390IPR021911ATPase family AAA domain-containing protein 3, domain of unknown function DUF3523
SuperFamilySSF525401.59E-39424602IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3001.3E-37425652IPR027417P-loop containing nucleoside triphosphate hydrolase
CDDcd000093.22E-17452585No hitNo description
SMARTSM003822.0E-14454587IPR003593AAA+ ATPase domain
PfamPF000041.6E-25458585IPR003959ATPase, AAA-type, core
PROSITE patternPS006740557576IPR003960ATPase, AAA-type, conserved site
SuperFamilySSF525401.59E-39632686IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MASNSIITSR SSTSSWTAKQ DKQFEMALAK FEKDTPDRWH NVARAVGGKS VEEVKRRYEL  60
LIRDVNDIES GRYPLPRLCS AAAIAAAAFT SMSTSHNLAH ADSRFRFPFF SSSSPPPPSE  120
SPADPSESTK QAAEPDERKG SGFDPESLER GAKALREINN SPHSKQVFDL MRKQEKTRLA  180
ELAAEKSHNE AIQAHKDIER QRQLAEDQRN LLQQQAQAKA QNLRYEDELA RKRLQTDHEA  240
QRRHNVELVK MQEESSIRKE QARIATEEQI QAQQRQTEKE RAELERETIR VKAMAEAEGR  300
AHEAKLTEEQ NRRMLLDKIN GEREKWLAAI NTTFSHIEGG VKALLTDRNK LIMTVGGATA  360
LAAGVYTTRE GARVTWGYIN RILGQPSLIR ESSMGRFPWA GSVSQFKTKV SKFGKAASAK  420
GENPLDNVVL HPSLKKRIEH LARATANTKS HQAPFRNMMF YGPPGTGKTM VAREIARKSG  480
LDYAMMTGGD VAPLGAQAVT KIHEIFDWAK KSNKGLLLFI DEADAFLCER NSTYMSEAQR  540
SALNALLFRT GDQSRDIVLV LATNRPGDLD SAVTDRIDEV IEFPLPGEDE RFKLLKLYLS  600
KYLTGEDQKG DKDTKTRWSH LFKKQSQKIA VEGDLTDQVI REAAKKTEGF SGREIAKLVA  660
GVQAAVYGRP NCVLDAQLFE EIVDYKIQEH HQRARLAIEG GQSFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-206106188RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018485404.10.0PREDICTED: ATPase family AAA domain-containing protein 3-like
TrEMBLA0A078HDP00.0A0A078HDP0_BRANA; BnaC03g48340D protein
TrEMBLA0A0D3BEG70.0A0A0D3BEG7_BRAOL; Uncharacterized protein
STRINGBo3g094120.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18328.17e-30RAD-like 4