PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC7896_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ERF | ||||||||
Protein Properties | Length: 326aa MW: 36994.4 Da PI: 4.4166 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.4 | 3e-17 | 115 | 164 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+++AeIrdp + r+ ++lg+f taeeAa +++a+ +l+g RrC7896_p1 115 KFRGVRRRP-WGKYAAEIRDPEQ---RRMIWLGTFSTAEEAAMVYDNAAIRLRG 164 89*******.**********743...5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.2E-27 | 114 | 172 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.6E-10 | 115 | 164 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.71E-20 | 115 | 173 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 8.67E-31 | 115 | 171 | No hit | No description |
SMART | SM00380 | 6.5E-38 | 115 | 178 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.089 | 115 | 172 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-8 | 116 | 127 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-8 | 138 | 154 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042991 | Biological Process | transcription factor import into nucleus | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MIMDEYMELR PVKYTEHKTV IKKYTKKLPA ESKKKISTGR DSARLVRVCV MDRDATDSSS 60 DDEEFLLPRR RVKRLINEIR VEPSSSGEVL AGKSLSVDPP VHKVSVPGVD QNQRKFRGVR 120 RRPWGKYAAE IRDPEQRRMI WLGTFSTAEE AAMVYDNAAI RLRGPDALTN FTVPTEPEPE 180 PEPESNVSVS LTSDSMDDSH HLSSPTSVLN YQISEPMDEP VKPVKQEFLE REPISWPIGE 240 DTSDNTDDSF PLDIPFLDKY FNESLPDISI FDQTMSTIES SDKDFFNGLM FFDDNIGGEN 300 YYSDIKEIGS VLNDLDEALI SDLLAV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-20 | 114 | 171 | 4 | 62 | ATERF1 |
3gcc_A | 5e-20 | 114 | 171 | 4 | 62 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00456 | DAP | Transfer from AT4G27950 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018448151.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor CRF4 | ||||
Swissprot | Q9SUE3 | 1e-156 | CRF4_ARATH; Ethylene-responsive transcription factor CRF4 | ||||
TrEMBL | A0A078FPK0 | 0.0 | A0A078FPK0_BRANA; BnaA08g13940D protein | ||||
TrEMBL | A0A3P6BUE5 | 0.0 | A0A3P6BUE5_BRACM; Uncharacterized protein | ||||
STRING | Bra010389.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2229 | 25 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 1e-141 | cytokinin response factor 4 |
Publications ? help Back to Top | |||
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