PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7896_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 326aa    MW: 36994.4 Da    PI: 4.4166
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7896_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43e-17115164255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 +++GVr+++ +g+++AeIrdp +   r+ ++lg+f taeeAa  +++a+ +l+g
  RrC7896_p1 115 KFRGVRRRP-WGKYAAEIRDPEQ---RRMIWLGTFSTAEEAAMVYDNAAIRLRG 164
                 89*******.**********743...5*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.2E-27114172IPR001471AP2/ERF domain
PfamPF008472.6E-10115164IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-20115173IPR016177DNA-binding domain
CDDcd000188.67E-31115171No hitNo description
SMARTSM003806.5E-38115178IPR001471AP2/ERF domain
PROSITE profilePS5103222.089115172IPR001471AP2/ERF domain
PRINTSPR003671.2E-8116127IPR001471AP2/ERF domain
PRINTSPR003671.2E-8138154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MIMDEYMELR PVKYTEHKTV IKKYTKKLPA ESKKKISTGR DSARLVRVCV MDRDATDSSS  60
DDEEFLLPRR RVKRLINEIR VEPSSSGEVL AGKSLSVDPP VHKVSVPGVD QNQRKFRGVR  120
RRPWGKYAAE IRDPEQRRMI WLGTFSTAEE AAMVYDNAAI RLRGPDALTN FTVPTEPEPE  180
PEPESNVSVS LTSDSMDDSH HLSSPTSVLN YQISEPMDEP VKPVKQEFLE REPISWPIGE  240
DTSDNTDDSF PLDIPFLDKY FNESLPDISI FDQTMSTIES SDKDFFNGLM FFDDNIGGEN  300
YYSDIKEIGS VLNDLDEALI SDLLAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-20114171462ATERF1
3gcc_A5e-20114171462ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018448151.10.0PREDICTED: ethylene-responsive transcription factor CRF4
SwissprotQ9SUE31e-156CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A078FPK00.0A0A078FPK0_BRANA; BnaA08g13940D protein
TrEMBLA0A3P6BUE50.0A0A3P6BUE5_BRACM; Uncharacterized protein
STRINGBra010389.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22292576
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-141cytokinin response factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]