PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7869_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 234aa    MW: 27062.2 Da    PI: 8.3325
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7869_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.18.2e-081950132
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                     +g W++eEde+l   v ++G  +W+tI+    
       RrC7869_p1 19 KGLWSPEEDEKLRSHVLKYGHVCWSTIPIQAD 50
                     678*****************99*****97766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.3741498IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.3E-201895IPR009057Homeodomain-like
SMARTSM007174.9E-81896IPR001005SANT/Myb domain
SuperFamilySSF466895.59E-121995IPR009057Homeodomain-like
CDDcd001671.41E-92294No hitNo description
PfamPF139212.9E-52299No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MVCKSETSNR KLNKERQRKG LWSPEEDEKL RSHVLKYGHV CWSTIPIQAD LDLRRVRSLK  60
KKRPHFSHSI PYWISKYLPG RTDNEIKNYW HSYLKKSVPS TKHETTRTPQ THSVTNSVKT  120
LESTTGGSSS FINVGESFST KVLNFSPSVV FSEWLDHSLV TDQSHQKCTY VQDHTVPEQR  180
GFVGTFGQRF YENNNSLDDF IPNSNFLLED EIEFCTSFSD SFLVDALASE QRSM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018434281.11e-144PREDICTED: transcription factor LAF1
TrEMBLA0A397YXZ81e-126A0A397YXZ8_BRACM; Uncharacterized protein
STRINGBra018027.1-P1e-126(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48920.17e-90myb domain protein 45