PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC7859_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 344aa MW: 38684.5 Da PI: 5.1438

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC7859_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.1	1.3e-07	191	237	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + rE++ R+ +N++f L ++l + + +K +K +iL A++ +++L RrC7859_p2 191 KAGREKKKREMLNDKFMDLSSVLEPT---RTPKTDKPAILDDAIRVVNQL 237 5669*******************9...9**************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.788	186	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.0E-5	192	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-5	192	243	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.6E-10	194	259	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.04E-6	194	238	No hit	No description
SuperFamily	SSF47459	6.94E-11	194	261	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
IYFPLHTVST YICLLLLCVS LSPLTILHTL RFCIHSLMMY QSNEDDDDLF ASLCFDHHSN 60 GGEDPYAFIQ TDQENLFPEF GLNLQPEQDH HVCTVGGDQF DSFSGDNNGL GGPFGGLVYS 120 IGSSAQLDLG THSFRGTAST HVQQEQEQER ACCPVVEINS SSSVEVFKEE FEEECSRKRG 180 RTGPCSKPGT KAGREKKKRE MLNDKFMDLS SVLEPTRTPK TDKPAILDDA IRVVNQLRGE 240 AHELKETNQM LLEEIKSLKA EKNELREEKM VLKSDKEKME QQMRSMAAVP SPGFMPSHPA 300 AFHQNKMAVY GSYGYYPNMP VMPYLLPPSQ RDTSQDQQNW SKAA

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

IYFPLHTVST YICLLLLCVS LSPLTILHTL RFCIHSLMMY QSNEDDDDLF ASLCFDHHSN  60
GGEDPYAFIQ TDQENLFPEF GLNLQPEQDH HVCTVGGDQF DSFSGDNNGL GGPFGGLVYS  120
IGSSAQLDLG THSFRGTAST HVQQEQEQER ACCPVVEINS SSSVEVFKEE FEEECSRKRG  180
RTGPCSKPGT KAGREKKKRE MLNDKFMDLS SVLEPTRTPK TDKPAILDDA IRVVNQLRGE  240
AHELKETNQM LLEEIKSLKA EKNELREEKM VLKSDKEKME QQMRSMAAVP SPGFMPSHPA  300
AFHQNKMAVY GSYGYYPNMP VMPYLLPPSQ RDTSQDQQNW SKAA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	176	198	RKRGRTGPCSKPGTKAGREKKKR
2	192	200	GREKKKREM

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00372	DAP	Transfer from AT3G23210	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018433039.1	0.0	PREDICTED: transcription factor bHLH34-like
Swissprot	Q9LTC7	1e-119	BH034_ARATH; Transcription factor bHLH34
TrEMBL	A0A0D3ABB4	0.0	A0A0D3ABB4_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6FUV4	0.0	A0A3P6FUV4_BRAOL; Uncharacterized protein (Fragment)
STRING	Bo1g102270.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4026	26	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23210.1	1e-99	bHLH family protein

Publications ? help Back to Top
Li X,Zhang H,Ai Q,Liang G,Yu D Two bHLH Transcription Factors, bHLH34 and bHLH104, Regulate Iron Homeostasis in Arabidopsis thaliana. Plant Physiol., 2016. 170(4): p. 2478-93 [PMID:26921305] Liang G,Zhang H,Li X,Ai Q,Yu D bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1743-1755 [PMID:28369511] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]