PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7859_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 137aa    MW: 15323.7 Da    PI: 5.0066
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7859_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.1e-191262255
         AP2  2 gykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55
                +y+GVr ++ +g+++AeIrd      ++ +r++lg+f tae+Aa+a+++a+ +++g
  RrC7859_p1 12 KYRGVRKRP-WGKYAAEIRD----SaRHgARVWLGTFNTAEDAARAYDRAAFSMRG 62
                8********.**********....33236*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.94E-191271No hitNo description
SMARTSM003806.7E-361276IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-321272IPR001471AP2/ERF domain
PfamPF008476.5E-141262IPR001471AP2/ERF domain
PROSITE profilePS5103223.7751270IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-231272IPR016177DNA-binding domain
PRINTSPR003671.5E-111324IPR001471AP2/ERF domain
PRINTSPR003671.5E-113652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MEHRVSNTNE VKYRGVRKRP WGKYAAEIRD SARHGARVWL GTFNTAEDAA RAYDRAAFSM  60
RGQKAILNFP HEYPMMTDGP SGRSENVVAS SSSQFSGTGG SSVKEVIEFE YLDDSLLEEL  120
LEGGESYNQD DQNDANH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-391211614114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00373DAPTransfer from AT3G23220Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018438400.14e-97PREDICTED: ethylene-responsive transcription factor ERF095-like
SwissprotQ9LTC62e-48ERF95_ARATH; Ethylene-responsive transcription factor ERF095
TrEMBLA0A0D3D5K14e-68A0A0D3D5K1_BRAOL; Uncharacterized protein
TrEMBLA0A3P6ELV94e-68A0A3P6ELV9_BRAOL; Uncharacterized protein
STRINGBo7g040820.17e-69(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.12e-39ERF family protein
Publications ? help Back to Top
  1. Quan R, et al.
    EIN3 and SOS2 synergistically modulate plant salt tolerance.
    Sci Rep, 2017. 7: p. 44637
    [PMID:28300216]