PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC784_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 308aa    MW: 33861.2 Da    PI: 5.5876
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC784_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.92.4e-154695255
               HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
               r +h+  E+rRR++iN++f+ Lre++P++     +K + a+ L ++++Y+++Lq
  RrC784_p2 46 RSKHSVTEQRRRSKINERFQILREIIPNS----EQKRDTASFLLEVIDYVQYLQ 95
               899*************************8....79******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.19E-1842115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-2144117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.0564494IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.63E-144699No hitNo description
PfamPF000101.1E-124695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-1150100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MRAGKANQEE DDYGEEDFGS KREGPSSAAA AASRDAKEND KASALRSKHS VTEQRRRSKI  60
NERFQILREI IPNSEQKRDT ASFLLEVIDY VQYLQEKVQK YEGSYPGWSQ EPTKLTPWRN  120
NHWRVQSLAN PPVAAASNGS VPVIPYPGKF EENTVPSSAP AIVAEMQNPV DSDLGRVYKP  180
IDSQHELDHD DDKELPPVQP INHPTFVHGE QGDGAGQSNN DLVIEGGTIS ISTAYSHELL  240
SSLTQALQNA GVDLSHAKLS VQIDLGKRAN QGLTHNDPSN KIPLSSDTEG STPSRGESEH  300
AHKRVKTL
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018456859.10.0PREDICTED: transcription factor BIM2
SwissprotQ9CAA41e-152BIM2_ARATH; Transcription factor BIM2
TrEMBLA0A0D3CZ530.0A0A0D3CZ53_BRAOL; Uncharacterized protein
STRINGBo6g108530.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59872745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-152BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]