PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7838_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 268aa    MW: 29656.2 Da    PI: 6.1845
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7838_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_150.35.1e-16183241260
                 XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 
                 ++ +r+rr++kNRe+A rsR+RK+a++ eLe+ +++Le+eN +L  e+e  +ke ++  
  RrC7838_p2 183 AAAQRQRRMIKNRESAARSRERKQAYQVELETLAAKLEQENVKLSLEIEDKRKERYQKL 241
                 5789********************************************99999888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.7E-13180237No hitNo description
SMARTSM003383.0E-12182246IPR004827Basic-leucine zipper domain
PfamPF001703.6E-15183243IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.806184236IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.19E-9186238No hitNo description
CDDcd147071.25E-14186226No hitNo description
PROSITE patternPS000360189204IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MASFKVMHSS SSSTNSDPSR RIPSSSSLRP QQLRRDPNAR RILGGYSPGT TMTVEGILHE  60
TFASDPPATE SSSLLMDAAA APTPMEDVVV GGGGGTETRV DEVWREMKEE EETQQHEEMM  120
TLEDFLAKAT GGGGEDGGES DDVDVKRSIV AFGNGVDVYG GGGGGGGARG KRARVMMEPL  180
DKAAAQRQRR MIKNRESAAR SRERKQAYQV ELETLAAKLE QENVKLSLEI EDKRKERYQK  240
LMEFVIPVVD KPNHQPRFFL RRIRSLEW
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894021e-110AC189402.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB057L05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013706430.11e-121G-box-binding factor 4-like
SwissprotP427778e-53GBF4_ARATH; G-box-binding factor 4
TrEMBLA0A078ITJ71e-119A0A078ITJ7_BRANA; BnaCnng27030D protein
STRINGBo7g067030.11e-119(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38522855
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44080.13e-49bZIP family protein