PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7798_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 250aa    MW: 27602.5 Da    PI: 4.8668
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7798_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.93.6e-13184229655
                 HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +++Er RR ri +++ +L+el+P+     +k  + a++Le+AveY+k Lq
  RrC7798_p1 184 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLEEAVEYVKALQ 229
                 689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.818178228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.46E-16181240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.91E-12182233No hitNo description
Gene3DG3DSA:4.10.280.105.4E-16183241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-10184229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-12184234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MQSTHGDGGG EGGSGEASRS GLSRIRSAPA TWIETLLEDD EEEDDLKPNL CLTELLTGVT  60
TRDSFEFPSS SSVEQGLYSH QGGGFHRQNS TPADFLSGSG AGSDGYFSNF GIPANYDYLT  120
PNVDIAAASK RSREIEAHFS SQMKEEQMSG GVSGMVDINM DKFLEDSVPC RVRAKRGCAT  180
HPRSIAERVR RTRISDRIRK LQELVPNMDK QTNTADMLEE AVEYVKALQS KIQELTEQQR  240
RCICKPKEEQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018447615.10.0PREDICTED: transcription factor bHLH80-like
SwissprotQ9C8P81e-134BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A0D3DKJ61e-154A0A0D3DKJ6_BRAOL; Uncharacterized protein
TrEMBLA0A3P6G2J11e-154A0A3P6G2J1_BRAOL; Uncharacterized protein
STRINGBo8g026850.11e-154(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51042551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.11e-120bHLH family protein