PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC7704_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Trihelix

Protein Properties

Length: 350aa MW: 38979.1 Da PI: 5.7103

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC7704_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	91.4	9.5e-29	46	139	1	84
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyfdq 84 rWt+qe+l+Li+++r e+r+rrg+ +++p+W++vs+++r++g++r+p+qC+++w+nl+++ykkike+e++ t +e++s +++ ++ RrC7704_p2 46 RWTRQEILVLIQGKRVAESRVRRGRaagmalgsgQMEPKWASVSSYCRRHGVNRGPVQCRKRWSNLAGDYKKIKEWESRVTkEETESYWVMRND 139 8********************97778888888*******************************************962666667777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.4E-5	46	111	IPR009057	Homeodomain-like
Pfam	PF13837	1.4E-12	46	136	No hit	No description
PROSITE profile	PS50090	6.4	46	112	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0050777	Biological Process	negative regulation of immune response
GO:0071219	Biological Process	cellular response to molecule of bacterial origin
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MSLEQQLGLI VTAVDGDGNG EGGGGENSAP SNEVGDDGVK TARLPRWTRQ EILVLIQGKR 60 VAESRVRRGR AAGMALGSGQ MEPKWASVSS YCRRHGVNRG PVQCRKRWSN LAGDYKKIKE 120 WESRVTKEET ESYWVMRNDV RRERKLPGFF DKEVYDVVDG GVVPPVLALG LAPATAEVEV 180 EAEGLLTELE RREPAPKSLQ GKFEIELKKC YMFVIMTLVL IKKNLFFYKD VIDKEKQAAC 240 EAEQGGVKEK EKEDTEAANP EAGSTSQEAR KRKRTSGGED EEEKEGEARE SMQNQLIQIL 300 ERNGQLLAAQ LEVQNANLKL DREQRKDHGD NLVAVLNKLA DAVAKIADKL

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MSLEQQLGLI VTAVDGDGNG EGGGGENSAP SNEVGDDGVK TARLPRWTRQ EILVLIQGKR  60
VAESRVRRGR AAGMALGSGQ MEPKWASVSS YCRRHGVNRG PVQCRKRWSN LAGDYKKIKE  120
WESRVTKEET ESYWVMRNDV RRERKLPGFF DKEVYDVVDG GVVPPVLALG LAPATAEVEV  180
EAEGLLTELE RREPAPKSLQ GKFEIELKKC YMFVIMTLVL IKKNLFFYKD VIDKEKQAAC  240
EAEQGGVKEK EKEDTEAANP EAGSTSQEAR KRKRTSGGED EEEKEGEARE SMQNQLIQIL  300
ERNGQLLAAQ LEVQNANLKL DREQRKDHGD NLVAVLNKLA DAVAKIADKL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269\|PubMed:25770109}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00288	DAP	Transfer from AT2G33550	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189292	0.0	AC189292.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026E08, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018478342.1	0.0	PREDICTED: trihelix transcription factor ASR3-like isoform X1
Swissprot	Q8VZ20	1e-160	ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBL	A0A3P6CLW7	1e-165	A0A3P6CLW7_BRAOL; Uncharacterized protein
STRING	XP_010469456.1	1e-162	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6557	28	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-143	Trihelix family protein

Publications ? help Back to Top
Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]