PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7703_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Nin-like
Protein Properties Length: 859aa    MW: 95324.6 Da    PI: 6.5513
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7703_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK90.41.4e-28548598252
      RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                 ek++sl++l+++Fs+++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rki+++
  RrC7703_p1 548 EKSVSLSVLQQHFSGSLKDAAKSLGVCPTTLKRICRQHGIMRWPSRKINKV 598
                 799**********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.87531618IPR003035RWP-RK domain
PfamPF020421.9E-27551598IPR003035RWP-RK domain
SuperFamilySSF542773.92E-22748844No hitNo description
Gene3DG3DSA:3.10.20.2401.0E-23758838No hitNo description
PROSITE profilePS5174519.698759841IPR000270PB1 domain
SMARTSM006661.7E-23759841IPR000270PB1 domain
CDDcd064071.63E-34760840No hitNo description
PfamPF005644.6E-17761839IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 859 aa     Download sequence    Send to blast
MDHPFASRFG YQDMSTEEMD GLSFGSGVRN LFSDDTLNSS NSELMNFDSF STWYNSLTSD  60
TDVLFSQYGL STSQSMPFGA ITSSGLTHDL ESSYHGEMSS LFHRSLDGDE LSGKRRRVVA  120
ANQKNDFPNL MSSTIPRSLS HSLDEKMLKA LSLFIESTGS REGILAQVWT PIKIGDQHML  180
STCDQAYLLD PRLSQYREVS RKFTFASESN QCSFPGLPGR VFISGVPEWT SNVLYYKTEE  240
YLRMKHAVDN EVRGSIAIPV LEASGKTCCA VMELVTSKEK HNFDTEMDSV CRALQAVNLR  300
TSACPRPQYL SSNQKAALAE IQDVLRAVCH AHRLPLALAW IPCIYGKKGK DQPVNSGESS  360
VLCVEETACY VNDMKMEGFV HVCLKHCLRA KEGIVGKAFV SNQPFFSSDV KAYDISEYPL  420
VQHARKYGLN AAVAIKLRST YTGEDDYILE LFLPLSMKGS LEQQLLLDSL SGTMQRICRT  480
LRSVSDVGEA GLSKFSETKC SGKYQTMASD SELNSTRNIF SDISSNKDNS STNEQDMRTQ  540
EKKKSTTEKS VSLSVLQQHF SGSLKDAAKS LGVCPTTLKR ICRQHGIMRW PSRKINKVNR  600
SLRKIQTVLD SVQGVEGGLK FDSATGEFFA VCPFSKKLDT QKDQEDVAQD TTLRWRDYNL  660
KPLSGCAGSF VEVDTSVKQW AWMAEQSSFH GSEGIKNNIS QAIRCSGNIN EPNQSMSCSM  720
SGSSNGSGAA MLRSSSTSMD DCNQMRSHKS NSSESGPTML TVKATYLEDT IRFKFEPSLG  780
CSQLYKEIGK RFKLQEESFQ LKYLDDEEEW VMLVTDSDLQ ECLEILCGMG KQTVKFLVRE  840
LSAPIGSSAG SNGYLGTCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113117KRRRV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018476896.10.0PREDICTED: protein NLP8-like
SwissprotO228640.0NLP8_ARATH; Protein NLP8
TrEMBLA0A3P6ASH60.0A0A3P6ASH6_BRAOL; Uncharacterized protein
STRINGBo3g036620.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22992768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43500.20.0Nin-like family protein
Publications ? help Back to Top
  1. Yan D, et al.
    NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 13179
    [PMID:27731416]