PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC7703_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | Nin-like | ||||||||
Protein Properties | Length: 859aa MW: 95324.6 Da PI: 6.5513 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 90.4 | 1.4e-28 | 548 | 598 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l+++Fs+++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rki+++ RrC7703_p1 548 EKSVSLSVLQQHFSGSLKDAAKSLGVCPTTLKRICRQHGIMRWPSRKINKV 598 799**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.87 | 531 | 618 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.9E-27 | 551 | 598 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 3.92E-22 | 748 | 844 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 1.0E-23 | 758 | 838 | No hit | No description |
PROSITE profile | PS51745 | 19.698 | 759 | 841 | IPR000270 | PB1 domain |
SMART | SM00666 | 1.7E-23 | 759 | 841 | IPR000270 | PB1 domain |
CDD | cd06407 | 1.63E-34 | 760 | 840 | No hit | No description |
Pfam | PF00564 | 4.6E-17 | 761 | 839 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 859 aa Download sequence Send to blast |
MDHPFASRFG YQDMSTEEMD GLSFGSGVRN LFSDDTLNSS NSELMNFDSF STWYNSLTSD 60 TDVLFSQYGL STSQSMPFGA ITSSGLTHDL ESSYHGEMSS LFHRSLDGDE LSGKRRRVVA 120 ANQKNDFPNL MSSTIPRSLS HSLDEKMLKA LSLFIESTGS REGILAQVWT PIKIGDQHML 180 STCDQAYLLD PRLSQYREVS RKFTFASESN QCSFPGLPGR VFISGVPEWT SNVLYYKTEE 240 YLRMKHAVDN EVRGSIAIPV LEASGKTCCA VMELVTSKEK HNFDTEMDSV CRALQAVNLR 300 TSACPRPQYL SSNQKAALAE IQDVLRAVCH AHRLPLALAW IPCIYGKKGK DQPVNSGESS 360 VLCVEETACY VNDMKMEGFV HVCLKHCLRA KEGIVGKAFV SNQPFFSSDV KAYDISEYPL 420 VQHARKYGLN AAVAIKLRST YTGEDDYILE LFLPLSMKGS LEQQLLLDSL SGTMQRICRT 480 LRSVSDVGEA GLSKFSETKC SGKYQTMASD SELNSTRNIF SDISSNKDNS STNEQDMRTQ 540 EKKKSTTEKS VSLSVLQQHF SGSLKDAAKS LGVCPTTLKR ICRQHGIMRW PSRKINKVNR 600 SLRKIQTVLD SVQGVEGGLK FDSATGEFFA VCPFSKKLDT QKDQEDVAQD TTLRWRDYNL 660 KPLSGCAGSF VEVDTSVKQW AWMAEQSSFH GSEGIKNNIS QAIRCSGNIN EPNQSMSCSM 720 SGSSNGSGAA MLRSSSTSMD DCNQMRSHKS NSSESGPTML TVKATYLEDT IRFKFEPSLG 780 CSQLYKEIGK RFKLQEESFQ LKYLDDEEEW VMLVTDSDLQ ECLEILCGMG KQTVKFLVRE 840 LSAPIGSSAG SNGYLGTCL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 113 | 117 | KRRRV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018476896.1 | 0.0 | PREDICTED: protein NLP8-like | ||||
Swissprot | O22864 | 0.0 | NLP8_ARATH; Protein NLP8 | ||||
TrEMBL | A0A3P6ASH6 | 0.0 | A0A3P6ASH6_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g036620.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2299 | 27 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43500.2 | 0.0 | Nin-like family protein |
Publications ? help Back to Top | |||
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