PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC7663_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ERF | ||||||||
Protein Properties | Length: 181aa MW: 19939.6 Da PI: 10.131 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.4 | 1e-19 | 11 | 60 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrd ++ ++r++lg+f+t+eeAa a++ a++ l+g RrC7663_p1 11 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDGAARFLRG 60 6********.**********883....5***********************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 3.0E-34 | 11 | 74 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.37E-29 | 11 | 68 | No hit | No description |
Pfam | PF00847 | 3.0E-13 | 11 | 60 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.405 | 11 | 68 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.51E-22 | 11 | 69 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-31 | 11 | 68 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-11 | 12 | 23 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-11 | 34 | 50 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MASTSCAREV HYRGVRKRPW GRYAAEIRDP WKKTRVWLGT FDTPEEAALA YDGAARFLRG 60 IKAKTNFPSP LSLDLNHIPS PSAVAAAAEN HHNHHLWFSA PPPPPPPLHI SGNYRHHGLY 120 LRTGVLNDRT PSTEAPLYFA ASPAAATSSP RVLELMSSSP SSPTVRRGLA IDLNEPPPLW 180 L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-21 | 7 | 68 | 1 | 63 | ATERF1 |
3gcc_A | 8e-21 | 7 | 68 | 1 | 63 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00645 | PBM | Transfer from LOC_Os05g41760 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB055883 | 2e-76 | AB055883.1 Arabidopsis thaliana AtERF12 gene for ERF domain protein12, complete cds. | |||
GenBank | AC010155 | 2e-76 | AC010155.3 Genomic sequence for Arabidopsis thaliana BAC F3M18 from chromosome I, complete sequence. | |||
GenBank | AY099798 | 2e-76 | AY099798.1 Arabidopsis thaliana ethylene responsive element binding factor, putative (At1g28360) mRNA, complete cds. | |||
GenBank | BT002604 | 2e-76 | BT002604.1 Arabidopsis thaliana ethylene responsive element binding factor, putative (At1g28360) mRNA, complete cds. | |||
GenBank | CP002684 | 2e-76 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013584849.1 | 1e-113 | PREDICTED: ethylene-responsive transcription factor 12-like | ||||
Swissprot | Q94ID6 | 6e-83 | ERF81_ARATH; Ethylene-responsive transcription factor 12 | ||||
TrEMBL | A0A0D3CE92 | 1e-112 | A0A0D3CE92_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g055840.1 | 1e-112 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28360.1 | 1e-71 | ERF domain protein 12 |