PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7650_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 372aa    MW: 41398.8 Da    PI: 4.744
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7650_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59.5e-20112162256
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                 +y+G+r+++ +g+W+AeIrdp++    +r +lg+f+taeeAa+a++aa+++++g+
  RrC7650_p1 112 QYRGIRQRP-WGKWAAEIRDPRK---GAREWLGTFDTAEEAARAYDAAARRIRGN 162
                 69*******.**********954...3*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.1E-38112175IPR001471AP2/ERF domain
PROSITE profilePS5103224.553112169IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-22112170IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.6E-32112170IPR001471AP2/ERF domain
CDDcd000186.87E-17112170No hitNo description
PfamPF008476.4E-13113161IPR001471AP2/ERF domain
PRINTSPR003673.6E-11113124IPR001471AP2/ERF domain
PRINTSPR003673.6E-11135151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001666Biological Processresponse to hypoxia
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MCGGAIISDF IPPPRSRRVT SEFIWPDLKK KGKASKKKRS DFLDLEDEFE ADFQGFKDDS  60
SFHCEEEDEF DVDDDDDVFA DVKPFVFTAG PVSGIESGGQ AEKCAKRKRK NQYRGIRQRP  120
WGKWAAEIRD PRKGAREWLG TFDTAEEAAR AYDAAARRIR GNKAKVNFPE EMVPSKRPAA  180
KTSNLKKPVA KQNQNPTLVQ QPTHVSQFCN NSFSDVSFTE AKPQMFNNQF FDVGGNNGYQ  240
YFSSDQGSNS LDCSEFGWSE HGPKTPEISS MLVNNNQAPF IEETNAAKKL KTNSGDGISN  300
NDGSDDLMAY LNNALWESPL EVEAMLGADA ATMTQEEANP MDLWSLDDIN SMLDGGGFAV  360
GGNAYHPRKC LF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-22112169260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A4e-211111711374Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in carotenoid biosynthesis regulation. Binds to the 5'-ATCTA-3' element present in the promoter of phytoene synthase (PSY) and phytoene desaturase (PDS). Involved in ethylene response and resistance to necrotrophic pathogens. Acts as a downstream regulator in the ethylene signaling pathway. Partially redundant with RAP2-12. {ECO:0000269|PubMed:17873090, ECO:0000269|PubMed:20357136, ECO:0000269|PubMed:22530619}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by darkness, ethylene and Botrytis cinerea. {ECO:0000269|PubMed:20357136, ECO:0000269|PubMed:22530619}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3525205e-67AK352520.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-01-B04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018491063.10.0PREDICTED: LOW QUALITY PROTEIN: ethylene-responsive transcription factor RAP2-2-like
RefseqXP_018491064.10.0PREDICTED: LOW QUALITY PROTEIN: ethylene-responsive transcription factor RAP2-2-like
SwissprotQ9LUM41e-167RAP22_ARATH; Ethylene-responsive transcription factor RAP2-2
TrEMBLR0G5V10.0R0G5V1_9BRAS; Uncharacterized protein
STRINGCagra.1582s0005.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.31e-149related to AP2 2
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Bui LT,Giuntoli B,Kosmacz M,Parlanti S,Licausi F
    Constitutively expressed ERF-VII transcription factors redundantly activate the core anaerobic response in Arabidopsis thaliana.
    Plant Sci., 2015. 236: p. 37-43
    [PMID:26025519]
  3. Gasch P, et al.
    Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis.
    Plant Cell, 2016. 28(1): p. 160-80
    [PMID:26668304]
  4. Yao Y, et al.
    ETHYLENE RESPONSE FACTOR 74 (ERF74) plays an essential role in controlling a respiratory burst oxidase homolog D (RbohD)-dependent mechanism in response to different stresses in Arabidopsis.
    New Phytol., 2017. 213(4): p. 1667-1681
    [PMID:28164334]
  5. Giuntoli B, et al.
    Age-dependent regulation of ERF-VII transcription factor activity in Arabidopsis thaliana.
    Plant Cell Environ., 2017. 40(10): p. 2333-2346
    [PMID:28741696]