PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC7564_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Trihelix

Protein Properties

Length: 348aa MW: 38259.3 Da PI: 6.9535

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC7564_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	58.1	2.4e-18	19	109	2	73
trihelix 2 WtkqevlaLiearremeerlrrgk...................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 Wt +e+++Liea++ ++er r++ ++ +W+++ ++++++g+ rs++qC++kw+nl ++ykk++e e++r + RrC7564_p1 19 WTLNETMVLIEAKKMDDERRMRRSiglpapehshdsqsssgnkPAELRWKWIEDYCWRKGCMRSQNQCNDKWDNLMRDYKKVREYERRRVE 109 ************777666665555666666666777777669999**************************************9843 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.713	11	94	IPR017877	Myb-like domain
Pfam	PF13837	1.8E-13	18	109	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MADQSGGLVM MREYRKGNWT LNETMVLIEA KKMDDERRMR RSIGLPAPEH SHDSQSSSGN 60 KPAELRWKWI EDYCWRKGCM RSQNQCNDKW DNLMRDYKKV REYERRRVES SFAAESSSSA 120 AAETGTYWTM EKSERKERNL PSNMSPQIYQ ALFDVVESKT HPSLIAATTV TAAVAAAAAS 180 GNTAAAATAP TSTVSSAATT TANFVTSSTA FFSCAANTAH SSSDSDTSEH PDTSRAKRRR 240 TVPTTTAGPS GAGIDNAETE EGETVVAAFS RSASLIANAI RESEERQERR HKEVMSLEER 300 RLMIEESNVQ INREGMNGLV EAINKLASSI FALASSSHHN NQQQGGPS

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MADQSGGLVM MREYRKGNWT LNETMVLIEA KKMDDERRMR RSIGLPAPEH SHDSQSSSGN  60
KPAELRWKWI EDYCWRKGCM RSQNQCNDKW DNLMRDYKKV REYERRRVES SFAAESSSSA  120
AAETGTYWTM EKSERKERNL PSNMSPQIYQ ALFDVVESKT HPSLIAATTV TAAVAAAAAS  180
GNTAAAATAP TSTVSSAATT TANFVTSSTA FFSCAANTAH SSSDSDTSEH PDTSRAKRRR  240
TVPTTTAGPS GAGIDNAETE EGETVVAAFS RSASLIANAI RESEERQERR HKEVMSLEER  300
RLMIEESNVQ INREGMNGLV EAINKLASSI FALASSSHHN NQQQGGPS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189444	0.0	AC189444.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB070J23, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009102667.1	1e-147	PREDICTED: uncharacterized protein LOC103828785 isoform X1
Refseq	XP_013653078.1	1e-147	uncharacterized protein BNAA07G06920D isoform X1
TrEMBL	A0A078IHV6	1e-172	A0A078IHV6_BRANA; BnaC05g25240D protein
STRING	Bra014906.1-P	1e-147	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3493	26	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31310.1	2e-70	Trihelix family protein