PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7555_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 147aa    MW: 16351.1 Da    PI: 9.657
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7555_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-056688123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ykC+ CgksFs+   L  H  +H
  RrC7555_p1 66 YKCTVCGKSFSSYQALGGHKTSH 88
                9***********99998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.96E-76390No hitNo description
PfamPF139121.0E-136690IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.1E-56688IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.0946688IPR007087Zinc finger, C2H2
SMARTSM003550.00286688IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MEPENLEQWA KRKRTKRQRF DQTHHNQETT PSEEEYLALC LLMLARGSAV HSPLPPSLPS  60
SDHRGYKCTV CGKSFSSYQA LGGHKTSHRK PVNNTDVPSN QEPFNNNNTH RNSNGGSVII  120
NVNFQARNGE GIVDARPRAV SFPVASA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895261e-111AC189526.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB092J12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018455227.18e-71PREDICTED: zinc finger protein AZF1-like
SwissprotQ9SSW17e-49AZF1_ARATH; Zinc finger protein AZF1
TrEMBLA0A397XRZ92e-66A0A397XRZ9_BRACM; Uncharacterized protein
TrEMBLA0A3P5XVL42e-66A0A3P5XVL4_BRACM; Uncharacterized protein
TrEMBLM4F9T12e-66M4F9T1_BRARP; Uncharacterized protein
STRINGBra037845.1-P3e-67(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31212264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67450.13e-50zinc-finger protein 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]