PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RrC7541_p2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 260aa MW: 29954.9 Da PI: 6.4605 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 62.8 | 6e-20 | 113 | 172 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +Dg+ WrKYGqK++k++++ +sYY+C+++ +C++kk+v+ +++p + +tY g+H+++ RrC7541_p2 113 HDGFLWRKYGQKQIKEANH-QSYYKCAYTkdqNCEAKKQVQMIQHNPPLYSTTYFGHHTCQ 172 6**************9865.8******988899**************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.1E-20 | 105 | 172 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 16.122 | 107 | 174 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-19 | 109 | 173 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.7E-30 | 112 | 173 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-19 | 114 | 172 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009863 | Biological Process | salicylic acid mediated signaling pathway | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 260 aa Download sequence Send to blast |
MKSSQENAVE TLLHGHGCAN QLKLIMDQAK LDSSMEREDL AKSVLHCFSD ALSILIDTND 60 HHHQDDRSNN SSPQDSSPVL ENSRKPLHKR GRKTSVAESS DYRRHESPNP IYHDGFLWRK 120 YGQKQIKEAN HQSYYKCAYT KDQNCEAKKQ VQMIQHNPPL YSTTYFGHHT CQLHQAYASF 180 PIDTSDPLDS HMIRFDHPDS SIHQHQNQSQ DQIVYLKDEN MTLPDKAEEW SSPSQWMSSE 240 VAHAVEAFEF NPFRTSSDLS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 2e-12 | 114 | 172 | 10 | 69 | OsWRKY45 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00070 | PBM | Transfer from AT5G01900 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018458934.1 | 0.0 | PREDICTED: probable WRKY transcription factor 62 | ||||
Swissprot | Q9LZV6 | 1e-139 | WRK62_ARATH; Probable WRKY transcription factor 62 | ||||
TrEMBL | A0A398A4V1 | 1e-166 | A0A398A4V1_BRACM; Uncharacterized protein | ||||
STRING | Bra023211.1-P | 1e-150 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14505 | 15 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G01900.1 | 1e-141 | WRKY DNA-binding protein 62 |