PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7494_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 215aa    MW: 24339.6 Da    PI: 4.5095
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7494_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.89.3e-145599655
                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                   Er+RR+++N++++ Lr ++P+      +K++Ka+i + A+ YI+ Lq
  RrC7494_p1 55 IVLERNRRQKLNQRLFALRAVVPNI-----TKMDKASIIKDAISYIQGLQ 99
                568*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.9234998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.01E-125299No hitNo description
SuperFamilySSF474591.01E-1652114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-1655114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-115599IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.8E-1455104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MDDINPEFNN YWEPNSFLQN EEFEYDSWPL EEAISGSYDS SSPDGAATSP ASKNIVLERN  60
RRQKLNQRLF ALRAVVPNIT KMDKASIIKD AISYIQGLQY EETKLEAEIR ALESTPKSSL  120
SFGKDFDRDL LVPVTSKRMK QLDSGSSRSL IEVLELKVTF MGERTMVVNV TCDKRADTMV  180
KLCEVLESLN LIIITSNLNS FSGMIFNTLF IEVSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-1454108963Transcription factor MYC2
5gnj_B1e-1454108963Transcription factor MYC2
5gnj_E1e-1454108963Transcription factor MYC2
5gnj_F1e-1454108963Transcription factor MYC2
5gnj_G1e-1454108963Transcription factor MYC2
5gnj_I1e-1454108963Transcription factor MYC2
5gnj_M1e-1454108963Transcription factor MYC2
5gnj_N1e-1454108963Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1363800.0AY136380.1 Arabidopsis thaliana putative protein (At5g57140) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018460883.11e-153PREDICTED: transcription factor bHLH35-like
SwissprotQ2HIV91e-133BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A398A1N11e-146A0A398A1N1_BRACM; Uncharacterized protein
STRINGBra006831.1-P1e-145(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63672745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.11e-137bHLH family protein