PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7473_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 258aa    MW: 29274.5 Da    PI: 6.8462
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7473_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.51.7e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WTteEd++l++ +   G  +W++ ++  g++R++k+c++rw +yl
       RrC7473_p1 14 RGPWTTEEDKKLINFILTNGHYCWRALPNLAGLRRCGKSCRLRWTNYL 61
                     89******************99************************97 PP
2Myb_DNA-binding50.26e-1671111547
                      -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      + +E++l +d+++ +G++ W++Ia++++ gRt++++k++w+++
       RrC7473_p1  71 SHDEEQLVIDLHAHMGNK-WSKIASRLP-GRTDNEIKNHWNTH 111
                      789***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-20562IPR009057Homeodomain-like
PROSITE profilePS5129413.19961IPR017930Myb domain
SuperFamilySSF466892.78E-2611108IPR009057Homeodomain-like
SMARTSM007176.6E-111363IPR001005SANT/Myb domain
PfamPF002495.9E-131461IPR001005SANT/Myb domain
CDDcd001678.74E-81661No hitNo description
PROSITE profilePS5129427.1462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.4E-2563117IPR009057Homeodomain-like
SMARTSM007172.8E-1466114IPR001005SANT/Myb domain
CDDcd001679.22E-1171112No hitNo description
PfamPF002492.5E-1471111IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MGRQPCCDKL GVKRGPWTTE EDKKLINFIL TNGHYCWRAL PNLAGLRRCG KSCRLRWTNY  60
LRPDLKRGLL SHDEEQLVID LHAHMGNKWS KIASRLPGRT DNEIKNHWNT HIKKKLVKMG  120
IDPVTHQPLN QEPNNTDDNS MEPKSSSTKN VETNGITKEN ESSSTVTGQN SSMDSESHLL  180
SNIYNDEQLF SYLWSDESTK AETAWSDGNY DIGGTLYHDS NISGGGADFP IWSPQINKGK  240
NWTFQDSCQD FGVHDFGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1759931e-128AF175993.2 Arabidopsis thaliana putative transcription factor (MYB85) mRNA, complete cds.
GenBankAK1757181e-128AK175718.1 Arabidopsis thaliana mRNA for myb-like protein, complete cds, clone: RAFL22-25-P15.
GenBankAK1757771e-128AK175777.1 Arabidopsis thaliana mRNA for myb-like protein, complete cds, clone: RAFL22-35-I17.
GenBankAY0854971e-128AY085497.1 Arabidopsis thaliana clone 154343 mRNA, complete sequence.
GenBankAY5196081e-128AY519608.1 Arabidopsis thaliana MYB transcription factor (At4g22680) mRNA, complete cds.
GenBankDQ4468631e-128DQ446863.1 Arabidopsis thaliana clone pENTR221-At4g22680 myb family transcription factor (At4g22680) mRNA, complete cds.
GenBankDQ6532181e-128DQ653218.1 Arabidopsis thaliana clone 0000012874_0000009286 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018448942.10.0PREDICTED: protein ODORANT1-like
SwissprotQ50EX61e-85ODO1_PETHY; Protein ODORANT1
TrEMBLA0A3P6C7S31e-161A0A3P6C7S3_BRACM; Uncharacterized protein
STRINGBo3g165540.11e-160(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22680.11e-145myb domain protein 85
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]