PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7446_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 376aa    MW: 42600.7 Da    PI: 6.6048
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7446_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS296.76e-9113537668317
        GRAS  68 etseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLa 166
                 +ts  +ss+   al+++++v+Pi+kf h taN+++l+a++g ervH+iDfdi+qGlQWp+++q+LasRp++p ++RiTgvg+    sk+eleetg+rL+
  RrC7446_p2 135 STS-PSSSSDHDALRFLNQVTPIPKFIHYTANEMLLRAFQGRERVHVIDFDIKQGLQWPSFFQTLASRPKPPRHVRITGVGE----SKHELEETGDRLR 228
                 222.23556668999*******************************************************************....9************ PP

        GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                  fAe++++pfef++ + +rle ++l++L+vk+gEa+aVn+v q+h+ l++ +  +   ++++ lv+s++P  vv++eqe +h+s ++  r++++l+yys
  RrC7446_p2 229 GFAEAMDLPFEFHP-IIDRLEHVRLWMLHVKEGEAVAVNCVSQMHKRLHDGTGAAF--RSFVGLVRSTNPVAVVMAEQEGEHDSVQLEGRVFNSLKYYS 324
                 **************.7********************************77666665..99*************************************** PP

        GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWre 317
                 a+fd +++ l+++s  r+k+E++++grei+n+vaceg++r+erh  +++Wr+
  RrC7446_p2 325 AVFDVMHKHLGADSLVRVKIEEMVFGREIRNIVACEGSHRQERHVGFGQWRS 376
                 **************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.33649376IPR005202Transcription factor GRAS
PfamPF035142.1E-88135376IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MRALSKEHLE SISIIGNTQG FSWNNDSNNR GKKRLEEENK DESCLSRVKK RQRSQTGDDD  60
DDHNSFWFEQ NSAPALLFSL TCSDDDDEEK VWFAPSEVIS QPLQSNPNLA NSVITKLAGI  120
SGHKDIEVSR ASGSSTSPSS SSDHDALRFL NQVTPIPKFI HYTANEMLLR AFQGRERVHV  180
IDFDIKQGLQ WPSFFQTLAS RPKPPRHVRI TGVGESKHEL EETGDRLRGF AEAMDLPFEF  240
HPIIDRLEHV RLWMLHVKEG EAVAVNCVSQ MHKRLHDGTG AAFRSFVGLV RSTNPVAVVM  300
AEQEGEHDSV QLEGRVFNSL KYYSAVFDVM HKHLGADSLV RVKIEEMVFG REIRNIVACE  360
GSHRQERHVG FGQWRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-4614637598321Protein SCARECROW
5b3h_A1e-4614637597320Protein SCARECROW
5b3h_D1e-4614637597320Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894370.0AC189437.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB069A23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018452048.11e-159PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 28
SwissprotQ9CAN31e-135SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A078JRL11e-145A0A078JRL1_BRANA; BnaCnng67210D protein
STRINGBo00795s120.11e-145(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72962743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.11e-137GRAS family protein