PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7414_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 353aa    MW: 40375.4 Da    PI: 6.6346
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7414_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.2e-05193212120
                 EEETTTTEEESSHHHHHHHH CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                 ++Cp C k+F+r  n++ H+
  RrC7414_p3 193 FSCPLCYKTFNRYNNMQMHM 212
                 89*****************9 PP
2zf-C2H2130.00032277299123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 + C  Cgk F  k + ++H +++
  RrC7414_p3 277 FACRRCGKAFAVKGDWRTHEKNC 299
                 78*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.0E-5188216No hitNo description
PROSITE profilePS5015710.201193220IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.6E-5193212IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280195215IPR007087Zinc finger, C2H2
SuperFamilySSF576673.21E-6263297No hitNo description
Gene3DG3DSA:3.30.160.608.8E-6264297IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.767277297IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MSDPACIFNN DCYEYSFNYS TSFSHIYNSN GNFYYPHNTT DIDPNFTLPE SPPLREALPL  60
LSLSPIHKQQ EDNVPQHEHY FMETTENSYN SNFLVHDLDQ CQESTHHHDV TVDLHLGLPN  120
PGGDAIGYGG GSSSSDVILD STEQEHHHEH HQDRHQYHGV EVASDHHDGV QRGSHNHYWI  180
PTPSQILMGP TQFSCPLCYK TFNRYNNMQM HMWGHGSEYR KGPESLRGTQ PTGMLKLPCY  240
CCAPGCKNNI EHPRARPLKD FRTLQTHYKR KHGARPFACR RCGKAFAVKG DWRTHEKNCG  300
RLWYCSCGSD FKHKRSLKDH VKAFGNGHVP SFGTDCFGDH EDEEAASDVE QQE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3118111e-180AJ311811.2 Arabidopsis thaliana mRNA for WIP4 protein (At3g20880 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018486739.10.0PREDICTED: zinc finger protein WIP4
SwissprotQ8W0300.0ZWIP4_ARATH; Zinc finger protein WIP4
TrEMBLA0A397ZDQ60.0A0A397ZDQ6_BRACM; Uncharacterized protein
STRINGBo5g105140.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20880.11e-177WIP domain protein 4
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]