PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7409_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 224aa    MW: 25347.4 Da    PI: 5.6235
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7409_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-1981130255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr+++ +g+W+AeIrdp     + +r++lg+f tae Aa a+++a+ k++g
  RrC7409_p2  81 HYRGVRQRP-WGKWAAEIRDPQ----KaARVWLGTFETAESAALAYDEAAFKFKG 130
                 7********.**********93....36************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.2E-3380139IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-2281139IPR016177DNA-binding domain
PfamPF008476.6E-1481130IPR001471AP2/ERF domain
PROSITE profilePS5103224.68481138IPR001471AP2/ERF domain
SMARTSM003804.6E-3781144IPR001471AP2/ERF domain
CDDcd000187.71E-3281139No hitNo description
PRINTSPR003671.1E-118293IPR001471AP2/ERF domain
PRINTSPR003671.1E-11104120IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MSFRGDEPDE KEEAEEDENL FPVFSARSQH DMRVMVSALT QVIGNQQSNS HGSLPVYNPQ  60
DPSQTVAPIH QDQGNSMRRR HYRGVRQRPW GKWAAEIRDP QKAARVWLGT FETAESAALA  120
YDEAAFKFKG NKAKLNFPER VNVINNDQLS NSAYHSSNQI ESHNIPYYNR YYQDGSNNDM  180
LSFSLTTSTT TAGTTSSSSV GSSRPQEEQD YDRFWRFGDS SSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-2980142467ATERF1
3gcc_A5e-2980142467ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5608625e-75AY560862.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g61890) mRNA, complete cds.
GenBankBT0313575e-75BT031357.1 Arabidopsis thaliana unknown protein (At5g61890) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489632.11e-164PREDICTED: ethylene-responsive transcription factor ERF114-like
SwissprotQ9FH542e-95EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A078IT241e-108A0A078IT24_BRANA; BnaCnng24520D protein
TrEMBLA0A3P6B6081e-108A0A3P6B608_BRAOL; Uncharacterized protein
STRINGBo3g109240.11e-107(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.16e-82ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]