PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC738_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family TALE
Protein Properties Length: 289aa    MW: 32976.4 Da    PI: 6.1032
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC738_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.33.4e-102212581954
                HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                F+   ++yps +e+  LA+++gL+++qV++WF N R +
  RrC738_p3 221 FHHflHPYPSDAEKLMLASQTGLSKNQVSNWFINARVR 258
                554459******************************98 PP
2BELL103.71.3e-3381152172
       BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                e++el++k++kLlsll++Vd+r+  y++ql++vissFe+vag gs+k+Yt lAl+a++rhF +L++ai +q+
  RrC738_p3  81 ENHELHIKITKLLSLLQQVDERFDIYCNQLEQVISSFEQVAGEGSSKLYTGLALQAMTRHFGSLQEAILSQL 152
                689******************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.4E-1611150IPR006563POX domain
PfamPF075264.0E-3019148IPR006563POX domain
SMARTSM003892.3E-10202266IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-27207268IPR009057Homeodomain-like
CDDcd000867.17E-12208263No hitNo description
SuperFamilySSF466893.89E-18208271IPR009057Homeodomain-like
PfamPF059205.2E-18219258IPR008422Homeobox KN domain
PROSITE profilePS5007111.936221262IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MEEFRVRHEF SSPTSVSLDS RYVKAVRCLL EEVIDVGGRE VDLCNDVLIQ QLFPGRRRPG  60
FGLSSEIRSE LCNSGFMSLP ENHELHIKIT KLLSLLQQVD ERFDIYCNQL EQVISSFEQV  120
AGEGSSKLYT GLALQAMTRH FGSLQEAILS QLNSLRRRFI ISQDFVPKIT TSGLSQLSLF  180
DGNTPSSLQL LGWVQGPQRH AWKPIRGLPE TSVAILRAWL FHHFLHPYPS DAEKLMLASQ  240
TGLSKNQVSN WFINARVRLW KPMIEEMYRE EFGDSSDESM QREGNDDSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-17208269566Homeobox protein Meis2
3k2a_B3e-17208269566Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444383.10.0PREDICTED: BEL1-like homeodomain protein 11
SwissprotQ1PFD10.0BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLA0A078IEG80.0A0A078IEG8_BRANA; BnaAnng09210D protein
TrEMBLA0A397YRV60.0A0A397YRV6_BRACM; Uncharacterized protein
STRINGBo6g119610.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97362734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.10.0BEL1-like homeodomain 11