PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC7313_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | TCP | ||||||||
Protein Properties | Length: 399aa MW: 45421 Da PI: 8.4155 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 124.4 | 1.3e-38 | 149 | 309 | 2 | 133 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....................ssssasec...... 73 + ++drhski T++g RdRR+Rls+++a+++F Lqd+LGfdk+skt+eWLl+qakp+i+++t++ ++s+ RrC7313_p1 149 PSRTDRHSKIKTAKGTRDRRMRLSLDVAKELFGLQDMLGFDKASKTVEWLLTQAKPEIIKITSSlsnqfkhggaesqtrpaigsiH--TSSDLckigsm 245 5799************************************************************9999999988887776665431..22222244422 PP TCP 74 .eaesssssasnsssg......kaaksaakskksqksaasalnlakesrakarararertrekmrik 133 + ++ +sn +s+ + + k+k q ++ +l+k+ ra+ar+ra++rt+ekm+++ RrC7313_p1 246 wT---DEDGGSNTNSTetrekvDGRLMRGKRKMLQPRTPILKKLSKDARARARERAKDRTKEKMMKR 309 31...22222222222445555444444456666666666799*********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.1E-40 | 150 | 308 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.724 | 151 | 209 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.215 | 288 | 305 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 399 aa Download sequence Send to blast |
MNNNMSFSTI TTISEDYMLF PYNDHYSSQP LLPFSPCSSI NDISIHSNSN ILSNHLDHHC 60 QFLQTPSSFS QFEFVPDFAL LPYLHQQNNG HNDNKTITTG DRHHPSLLPL NNSIGESLVE 120 PSETITTHIE DSQRNSTVQD PKMNKVRKPS RTDRHSKIKT AKGTRDRRMR LSLDVAKELF 180 GLQDMLGFDK ASKTVEWLLT QAKPEIIKIT SSLSNQFKHG GAESQTRPAI GSIHTSSDLC 240 KIGSMWTDED GGSNTNSTET REKVDGRLMR GKRKMLQPRT PILKKLSKDA RARARERAKD 300 RTKEKMMKRI SQVNILDEEG HNHHDEIVKN NKSHVNCKSF EVTPCEEEIE QLLCKNDGFA 360 VCNESVLNKF YSSFPVPNHH RSQGTASSID QIERRRFCD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that prevents axillary bud outgrowth and delays early axillary bud development. Indirectly required for the auxin-induced control of apical dominance. {ECO:0000269|PubMed:17307924, ECO:0000269|PubMed:17452340}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced during environmentally induced bud dormancy (planting density). Repressed transiently after shoot apical meristem (SAM) decapitation (release from apical dominance). {ECO:0000269|PubMed:17307924}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013741085.1 | 0.0 | transcription factor TCP18 isoform X2 | ||||
Swissprot | A1YKT1 | 1e-178 | TCP18_ARATH; Transcription factor TCP18 | ||||
TrEMBL | A0A3P6AA79 | 0.0 | A0A3P6AA79_BRACM; Uncharacterized protein | ||||
STRING | Bra001710.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7269 | 27 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18550.1 | 1e-154 | TCP family protein |