PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7309_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 378aa    MW: 40728.1 Da    PI: 9.8002
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7309_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_173.52.9e-23260321162
                 XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                 e+elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L+aeN+aL++el++l+++++kl+  
  RrC7309_p1 260 ERELKRERRKQSNRESARRSRLRKQAETEELARKVEALTAENMALRSELNQLSEKSDKLRGA 321
                 89*******************************************************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077773.4E-29198IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165969.8E-14131226No hitNo description
Gene3DG3DSA:1.20.5.1701.5E-19254320No hitNo description
PfamPF001701.8E-21260322IPR004827Basic-leucine zipper domain
SMARTSM003381.3E-21260324IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.403262325IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.06E-11263319No hitNo description
CDDcd147022.18E-22265316No hitNo description
PROSITE patternPS000360267282IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MGKSEEQPPK VTKSDNKPSS PADQTNVHVY PDWAAMQAYY GPRVAMPPYY NSAMAASGHP  60
PPPPPYMWNP QHMMSPYGTP YAAVYPHGGG VYAHPGFPMG TQPQGQKGGP LTTPGTPLSI  120
DTPSKSTGNT ENGLMKKLKE FDGLAMSLGN GTNGDEGKRS RNSSETEGST DGSDGNTIGA  180
DEPKLKRSRE GTPTKDEKKH LVQSSSPRSV SQSSGDNCVK PNVEGGGAIV SAAGVSANSN  240
PTFMSQSLAM VPPETWLQNE RELKRERRKQ SNRESARRSR LRKQAETEEL ARKVEALTAE  300
NMALRSELNQ LSEKSDKLRG ANATLLDKLK SSEPEKRVKN SGNGDNKNKN QGESESNSTG  360
KLHQLLDTKP RADGVAAR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276282RRSRLRK
2276283RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8672884}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBNU271080.0U27108.1 Brassica napus transcription factor (BnGBF1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018434062.10.0PREDICTED: G-box-binding factor 3-like isoform X1
RefseqXP_018434077.10.0PREDICTED: G-box-binding factor 3-like isoform X1
SwissprotP427760.0GBF3_ARATH; G-box-binding factor 3
TrEMBLA0A397Z7M70.0A0A397Z7M7_BRACM; Uncharacterized protein
STRINGBra004550.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35712661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.10.0G-box binding factor 3
Publications ? help Back to Top
  1. Obayashi T, et al.
    ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis.
    Nucleic Acids Res., 2007. 35(Database issue): p. D863-9
    [PMID:17130150]
  2. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  3. Ramegowda V, et al.
    GBF3 transcription factor imparts drought tolerance in Arabidopsis thaliana.
    Sci Rep, 2017. 7(1): p. 9148
    [PMID:28831141]