PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC727_p2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bZIP | ||||||||
Protein Properties | Length: 370aa MW: 40042.1 Da PI: 6.7294 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 72.6 | 5.5e-23 | 250 | 313 | 1 | 64 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkseve 64 eke+kre+rkq+NRe+ArrsR+RK+ae+eeL kv++L aeN++L+++l +l++e++kl+ e+e RrC727_p2 250 EKEVKREKRKQSNRESARRSRLRKQAETEELSVKVDALVAENMTLRSKLGQLNDESEKLRLENE 313 89*********************************************************99885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 3.9E-26 | 1 | 99 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Pfam | PF16596 | 5.9E-14 | 134 | 228 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 2.6E-15 | 246 | 309 | No hit | No description |
Pfam | PF00170 | 9.0E-22 | 250 | 312 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 6.5E-20 | 250 | 314 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 12.76 | 252 | 315 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.0E-10 | 253 | 309 | No hit | No description |
CDD | cd14702 | 9.39E-21 | 255 | 304 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 257 | 272 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MGSNEEGKST QSDKPEQVQA PPPPPEQSNV HVYHHDWAAM QAYYGPRVAI PPQYYNSNGH 60 APAPPPPYIW GSPSPMMAPY GTPYPPFCPP GGVYAHPALQ MGSQPQGPVS QATPVVTTTP 120 LNLEAPANSP GNTDQGFMKK LKEFDGLAMS ISNNKAGSAE HSSGPRNSQS SENDDSSNGS 180 DGNTTGGEQS RKKRSREGSP NNDGKPSSQI VPLLRDENEK AAVTMGTPVM PTAMDFPQPC 240 HGAPHEVWNE KEVKREKRKQ SNRESARRSR LRKQAETEEL SVKVDALVAE NMTLRSKLGQ 300 LNDESEKLRL ENEALLAQLK ATQTQATGKT ENLISRVDNN NNNNSVSGSS KNVEQQLLNV 360 SLRTDSVAAS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 266 | 272 | RRSRLRK |
2 | 266 | 273 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. GBF2 is found to bind asymmetrically to the G-box. {ECO:0000269|PubMed:1373374}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | X92102 | 0.0 | X92102.1 R.sativus mRNA for G-box binding protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018456891.1 | 0.0 | PREDICTED: G-box-binding factor 2 isoform X2 | ||||
Swissprot | P42775 | 1e-170 | GBF2_ARATH; G-box-binding factor 2 | ||||
TrEMBL | Q41166 | 0.0 | Q41166_RAPSA; G-Box binding protein (Fragment) | ||||
STRING | Bra037382.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3571 | 26 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01120.1 | 1e-125 | G-box binding factor 2 |
Publications ? help Back to Top | |||
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