PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7242_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family TALE
Protein Properties Length: 407aa    MW: 45921.6 Da    PI: 6.7437
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7242_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox253.3e-082953321954
                 HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 Fe   ++yp+  ++  LA+++gL+  qV++WF N R +
  RrC7242_p1 295 FEHflHPYPKDLDKIMLARQTGLSRGQVSNWFINARVR 332
                 554459******************************88 PP
2BELL124.34.9e-40157228172
        BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                 erqelq+k +kLls+l+eVd+rYkqy++ +q+v+ssF+++ag+g+akpYt+lAl++iSrhFrcL+da+ +qi
  RrC7242_p1 157 ERQELQSKLTKLLSILDEVDRRYKQYYHHMQVVVSSFDVIAGCGAAKPYTALALQTISRHFRCLRDAVWGQI 228
                 79*******************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.6E-6397226IPR006563POX domain
PfamPF075264.6E-46103224IPR006563POX domain
PROSITE profilePS5007111.272273336IPR001356Homeobox domain
CDDcd000861.01E-10276337No hitNo description
SMARTSM003892.2E-8276340IPR001356Homeobox domain
SuperFamilySSF466893.17E-17277344IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-26279342IPR009057Homeodomain-like
PfamPF059202.8E-17293332IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MIYTNPAVSY PETFPGEANN VSASKQIQVL SSFGGGASQM LEIQDSGSWR EDQEDNDRNC  60
FPVMMRPSTG QGLSLDLSSQ TETWRGDNNE YATQVVSGFT RTIHHSKYLK AAQELLDEAV  120
NVKKALKQFQ QEGDKVDEDK ENKLQESSTN PDIPQGERQE LQSKLTKLLS ILDEVDRRYK  180
QYYHHMQVVV SSFDVIAGCG AAKPYTALAL QTISRHFRCL RDAVWGQILV VRKSLGGEHD  240
GLDRKGVGIS RLRNVDKQVR QQRALQRLGV MQPHTWRPQR GLPDSSVLIL RAWLFEHFLH  300
PYPKDLDKIM LARQTGLSRG QVSNWFINAR VRLWKPMVEE MYNEEFTDTL QENGPNNVVA  360
SSSMGQNTVE HADNQFTMTR HGSGEMSLTL GIQNSDARGV VPICPDG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-14282340563Homeobox protein Meis2
3k2a_B2e-14282340563Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0567960.0AY056796.1 Arabidopsis thaliana At2g16400/F16F14.10 mRNA, complete cds.
GenBankBT0006090.0BT000609.1 Arabidopsis thaliana putative homeodomain transcription factor (At2g16400/F16F14.10) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009121216.10.0PREDICTED: LOW QUALITY PROTEIN: BEL1-like homeodomain protein 7
SwissprotQ9SIW10.0BLH7_ARATH; BEL1-like homeodomain protein 7
TrEMBLA0A3N6R4L60.0A0A3N6R4L6_BRACR; Uncharacterized protein
STRINGXP_006409439.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28692563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.10.0BEL1-like homeodomain 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]