PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC723_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bZIP

Protein Properties

Length: 332aa MW: 36769.7 Da PI: 5.93

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC723_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.1	1.1e-09	138	187	5	54
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 kr++r NR +A rs +RK +i+eLe++v++L++e ++L +l + RrC723_p1 138 KRAKRILANRQSAARSKERKARYIQELERRVQSLQTEATTLSAQLTLFQR 187 9****************************************998876665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.1E-16	134	198	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.909	136	199	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	1.4E-7	136	183	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.05E-10	138	189	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.3E-8	138	183	No hit	No description
CDD	cd14703	1.73E-20	139	188	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MDDKPDPRPD PNAGSFPSSF HRRSRSDDMS MFMFTNPLIS SSSAAAAPPS SDDLPSDDDL 60 FSSFIDVDSL SSNPSQPISF PNHAAAAFPL SSSTSRPRHR HSNSVDAGCA MYASDEIMDA 120 KKAMPPEKLS ELWSIDPKRA KRILANRQSA ARSKERKARY IQELERRVQS LQTEATTLSA 180 QLTLFQRDTN GLANENTELK LRLQAMEQQA HLRNALNEAL RKEVERMKME TGEISSNSDS 240 YDMGVQQVQY SPSTFMAIPP YHHGSINNGQ DMMQQMRGFN QSRPMEMSNS QSVSEFLQNG 300 RLQGLEISSN NSSSLVKSEG PSLSASESSS AY

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018448079.1	0.0	PREDICTED: transcription factor RF2b-like
Swissprot	Q6S4P4	8e-83	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	A0A397YQV1	0.0	A0A397YQV1_BRACM; Uncharacterized protein
STRING	Bra030663.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13555	17	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06850.1	1e-118	basic leucine-zipper 52

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]