PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7163_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 292aa    MW: 32459.1 Da    PI: 5.7272
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7163_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-183383256
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56
                 ++GVr++  +g+WvAeIr+p     +  +r +lg+f t  eAa a+++a+kkl+g+
  RrC7163_p1 33 TFRGVRQRT-WGKWVAEIREP-----NhgTRLWLGTFNTSVEAAMAYDEAAKKLYGH 83
                69****999.**********9.....336*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.86E-283288No hitNo description
PROSITE profilePS5103220.1263390IPR001471AP2/ERF domain
SuperFamilySSF541716.02E-203389IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-283389IPR001471AP2/ERF domain
SMARTSM003802.4E-333396IPR001471AP2/ERF domain
PfamPF008471.8E-133483IPR001471AP2/ERF domain
PRINTSPR003672.3E-93445IPR001471AP2/ERF domain
PRINTSPR003672.3E-95672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MEKQQPPAKK RNMGRSRKGC MKGKGGPENS TCTFRGVRQR TWGKWVAEIR EPNHGTRLWL  60
GTFNTSVEAA MAYDEAAKKL YGHEAKLNLL HPQQQQQKQG INRDLSFSGH GSSSWEYKLD  120
GVHGLDLGLG SSNGSRGSWS GNLSFIQDDK TTSESSVSWL LPQRSDSEDQ ESVNAASGLT  180
FSTNFKQKNL IMTPDYGLSN GVGYRFLLGR ETNMEYDMSS SCGSSDNKES ILVPSVGGGK  240
AMLRPEVEDG TGYLEMDDLL EIDDLGLLIG KNGDFKSWCC DEFQQPWNWF LE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-153489359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A7e-1534911573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. {ECO:0000250, ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00519DAPTransfer from AT5G18450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018463806.10.0PREDICTED: dehydration-responsive element-binding protein 2G-like
SwissprotP618271e-151DRE2G_ARATH; Dehydration-responsive element-binding protein 2G
TrEMBLA0A0D3AJR81e-170A0A0D3AJR8_BRAOL; Uncharacterized protein
TrEMBLA0A3P6D1G01e-170A0A3P6D1G0_BRAOL; Uncharacterized protein
STRINGBo2g016490.11e-171(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99782035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.11e-121ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]