PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC7158_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | SBP | ||||||||
Protein Properties | Length: 112aa MW: 13160.1 Da PI: 10.3068 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 128.5 | 2.6e-40 | 5 | 81 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cq++gC+ dls+ak+yhr+h+vCe hsk+p v+v g+e+rfCqqCsr h++sefDe+krsCr+rL++hn+rrrk+q RrC7158_p1 5 RCQIDGCQLDLSSAKDYHRKHRVCENHSKCPLVTVGGMERRFCQQCSRLHAVSEFDEKKRSCRKRLSHHNARRRKPQ 81 6**************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.1E-32 | 2 | 67 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.53 | 3 | 80 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.23E-37 | 4 | 81 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.1E-31 | 6 | 79 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 112 aa Download sequence Send to blast |
MQVPRCQIDG CQLDLSSAKD YHRKHRVCEN HSKCPLVTVG GMERRFCQQC SRLHAVSEFD 60 EKKRSCRKRL SHHNARRRKP QGVFPLHAQR VYIYLRQIQD SIQDLKKSTD GV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 4e-26 | 6 | 79 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 61 | 78 | KKRSCRKRLSHHNARRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM096582 | 6e-76 | KM096582.1 Cardamine hirsuta squamosa promoter-binding-like protein 11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018492236.1 | 1e-61 | PREDICTED: squamosa promoter-binding-like protein 10 | ||||
Refseq | XP_018492237.1 | 1e-61 | PREDICTED: squamosa promoter-binding-like protein 10 | ||||
Refseq | XP_018492238.1 | 1e-61 | PREDICTED: squamosa promoter-binding-like protein 10 | ||||
Refseq | XP_018492239.1 | 1e-61 | PREDICTED: squamosa promoter-binding-like protein 10 | ||||
Refseq | XP_018492240.1 | 1e-61 | PREDICTED: squamosa promoter-binding-like protein 10 | ||||
Swissprot | Q8S9L0 | 2e-55 | SPL10_ARATH; Squamosa promoter-binding-like protein 10 | ||||
TrEMBL | A0A3N6R0F9 | 9e-57 | A0A3N6R0F9_BRACR; Uncharacterized protein | ||||
TrEMBL | A0A3P6EAD5 | 1e-56 | A0A3P6EAD5_BRAOL; Uncharacterized protein | ||||
STRING | Bra030041.1-P | 3e-57 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4111 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27370.4 | 7e-58 | squamosa promoter binding protein-like 10 |
Publications ? help Back to Top | |||
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