PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7110_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 848aa    MW: 94715 Da    PI: 6.5387
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7110_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.4e-17105151148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT++Ede l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
       RrC7110_p1 105 KGQWTAQEDEVLCKAVERFQGKNWKKIAECFK-DRTDVQCLHRWQKVL 151
                      799****************************9.************986 PP
2Myb_DNA-binding60.14.7e-19157203148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W++eEd+ ++ +v+++G+  W+tI+++++ gR +kqc++rw+++l
       RrC7110_p1 157 KGPWSKEEDDTIIALVEKYGPTKWSTISQHLP-GRIGKQCRERWHNHL 203
                      79******************************.*************97 PP
3Myb_DNA-binding47.34.8e-15209251145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++WT+eE+  l++a++ +G++ W+   + ++ gR+++++k++w+
       RrC7110_p1 209 KNAWTQEEEVTLIRAHQIYGNK-WAELTKFLP-GRSDNSIKNHWN 251
                      689*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.231100151IPR017930Myb domain
SMARTSM007179.7E-14104153IPR001005SANT/Myb domain
PfamPF002496.3E-14105151IPR001005SANT/Myb domain
SuperFamilySSF466894.81E-15106161IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-21106163IPR009057Homeodomain-like
CDDcd001673.43E-12108151No hitNo description
PROSITE profilePS5129432.071152207IPR017930Myb domain
SuperFamilySSF466898.24E-31154250IPR009057Homeodomain-like
SMARTSM007176.1E-18156205IPR001005SANT/Myb domain
PfamPF002496.2E-18157203IPR001005SANT/Myb domain
CDDcd001673.36E-15159203No hitNo description
Gene3DG3DSA:1.10.10.607.2E-27164210IPR009057Homeodomain-like
SMARTSM007172.0E-14208256IPR001005SANT/Myb domain
PROSITE profilePS5129418.066208258IPR017930Myb domain
PfamPF002491.3E-13209252IPR001005SANT/Myb domain
CDDcd001671.09E-10211251No hitNo description
Gene3DG3DSA:1.10.10.601.7E-21211258IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 848 aa     Download sequence    Send to blast
EAEKEYWGLL RSKDRFDKGS RGGRGGKRGG RFGRKRGSDS EGGRMMMIHF LSLYSCLSLA  60
RYSCCLHCAR LVIHQRHTGL GVCCIVVSLA KNEARTCGPA RRSTKGQWTA QEDEVLCKAV  120
ERFQGKNWKK IAECFKDRTD VQCLHRWQKV LNPELVKGPW SKEEDDTIIA LVEKYGPTKW  180
STISQHLPGR IGKQCRERWH NHLNPGINKN AWTQEEEVTL IRAHQIYGNK WAELTKFLPG  240
RSDNSIKNHW NSSVKKKLDS YYSSGLLDQS QSSPLIPIQN NSIASSSSWM HSSGDEGNFR  300
QGADAEESEC SQASTVFSCS QSTNDLLDEV KPANEEFYIP ELPSGTGHQI LNSPSHEDVK  360
IVVPEFFCEA ESSKEYQNHD SLREVRTTTA TEDHLQGISN NAKHDLDRDC PQLLTHNMEG  420
DENNEACQAV RLSDQPCLPN SDTDMHPQPQ TLITDEECCR VLFPNTTEDS VISSGDQCQN  480
LVEPQKGKGY IPFFSCDLVP SNSDLRQEYS PFGIRQLMIS SMNCTTPLRL WDSPCNNKSP  540
DVMLKDAAKS FSGTPSILKK RQHRDLMSPV LDRRKEKLLK SAEASSLAKD FSRLDVMLNK  600
NECASSSEAK KDTKETLESG GVTSANIDQE TRRSLVYYND DVEMQISSDE NGSRPDKKVN  660
TTASEPPFTV DSIPLLAIAG NKTNTAESSF DIIANCSIFD GTPFKKLLDT PSPWKSPLLF  720
GSFLQSPKLP PDITFEDIGC FMSPGDRSYD AIGLMKHLSE HTATAYADAL EVLGNDTPET  780
ILKKRQLNKS IQGKENQHWH QDQLESRSQV ECRALDFSDC GTPGKAKVSS ASPGGYSSPS  840
SYLLKSCR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C7e-661052586159MYB PROTO-ONCOGENE PROTEIN
1h89_C7e-661052586159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (PubMed:21862669). Transcription activator involved in the regulation of cytokinesis, probably via the activation of several G2/M phase-specific genes transcription (e.g. KNOLLE) (PubMed:17287251, PubMed:21862669). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). Required for the maintenance of diploidy (PubMed:21862669). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:21862669, ECO:0000269|PubMed:26069325}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Constant levels during cell cycle. Activated by CYCB1. {ECO:0000269|PubMed:17287251}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1516460.0AF151646.1 Arabidopsis thaliana PC-MYB1 (PC-MYB1) mRNA, complete cds.
GenBankAF1760050.0AF176005.2 Arabidopsis thaliana putative c-myb-like transcription factor (AtMYB3R-1) mRNA, complete cds.
GenBankAF1897840.0AF189784.1 Arabidopsis thaliana putative c-myb-like transcription factor (MYB3R-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018477936.10.0PREDICTED: myb-related protein 3R-1-like
SwissprotQ9S7G70.0MB3R1_ARATH; Transcription factor MYB3R-1
TrEMBLA0A3P6A2R40.0A0A3P6A2R4_BRACM; Uncharacterized protein
STRINGBra037045.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46742649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.10.0Homeodomain-like protein
Publications ? help Back to Top
  1. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]