PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC710_p2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | CO-like | ||||||||
Protein Properties | Length: 341aa MW: 37990.4 Da PI: 7.2132 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.5 | 1e-06 | 10 | 52 | 4 | 40 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 + C+++ + + +C+ ++ +lC +C ++H H++v RrC710_p2 10 QACDTCRSAACTVYCRADSAYLCTSCDAQIHAAnrlasrHERV 52 57******99*********************656788888876 PP | |||||||
2 | zf-B_box | 35.7 | 1.8e-11 | 52 | 97 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 r+C+ +e+ ++ +fC+ + lC C +++H+ H++vp+ RrC710_p2 52 VRVCQSCERAPAAFFCKADAASLCTACDSQIHSAnplarrHQRVPI 97 689*****************************66899999**9997 PP | |||||||
3 | CCT | 67.4 | 3.9e-23 | 274 | 318 | 1 | 45 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 R+a+++RY+eK+ktRkFeK+irY+sRK++Ae+RpR+KGrF+k++e RrC710_p2 274 RKARVMRYREKKKTRKFEKTIRYASRKEYAEKRPRIKGRFAKRNE 318 9*****************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.765 | 7 | 54 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 9.3E-9 | 7 | 54 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 9.84E-8 | 12 | 54 | No hit | No description |
PROSITE profile | PS50119 | 12.287 | 50 | 97 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 4.2E-9 | 52 | 97 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.33E-10 | 53 | 97 | No hit | No description |
SMART | SM00336 | 1.9E-12 | 55 | 97 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 2.4E-17 | 274 | 316 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.648 | 274 | 316 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048576 | Biological Process | positive regulation of short-day photoperiodism, flowering | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0042802 | Molecular Function | identical protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MLKQESNWAQ ACDTCRSAAC TVYCRADSAY LCTSCDAQIH AANRLASRHE RVRVCQSCER 60 APAAFFCKAD AASLCTACDS QIHSANPLAR RHQRVPILPI SGSMATNHSS ETTEPENIVV 120 VGQEEEDEAE AASWLLPSSV KNCGDNNNNN NRFSVGEEYL DLVDYSSSMD KRFIGQSNQY 180 QQDYNVPQRS YVADGVVPLQ LDVSKGHTHH EQHNFQFGFT NVSSEAYGSS SGSPIHMVSL 240 VPESTTTSEA TVSPKAATEE LPDAPVQMLS PMERKARVMR YREKKKTRKF EKTIRYASRK 300 EYAEKRPRIK GRFAKRNEVD ANQGLSTMVM FDTGYGIVPS F |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor that may be involved in the light input to the circadian clock but does not affect flowering time. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF510449 | 0.0 | AF510449.1 Brassica nigra isolate S178GE COL1 protein (COL1) gene, complete cds. | |||
GenBank | AF510452 | 0.0 | AF510452.1 Brassica nigra isolate S53SM COL1 protein (COL1) gene, complete cds. | |||
GenBank | AF510453 | 0.0 | AF510453.1 Brassica nigra isolate 27SPA COL1 protein (COL1) gene, complete cds. | |||
GenBank | AF510455 | 0.0 | AF510455.1 Brassica nigra isolate 24SPA COL1 protein (COL1) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018443082.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 1 | ||||
Swissprot | O50055 | 1e-164 | COL1_ARATH; Zinc finger protein CONSTANS-LIKE 1 | ||||
TrEMBL | Q8GRR6 | 0.0 | Q8GRR6_BRANI; COL1 protein | ||||
STRING | Bra008668.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2128 | 26 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15850.1 | 1e-140 | CONSTANS-like 1 |
Publications ? help Back to Top | |||
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