PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC7091_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Dof

Protein Properties

Length: 287aa MW: 32384.1 Da PI: 8.8383

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC7091_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.8	5.6e-39	16	75	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++lkcprC+s+ntkfCyynnyslsqPr+fCk+CrryWt+GG+lrnvP+Ggg+rk kks RrC7091_p1 16 DQQTLKCPRCNSSNTKFCYYNNYSLSQPRHFCKSCRRYWTRGGSLRNVPIGGGCRKTKKS 75 57899****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-34	3	74	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.2E-33	18	74	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.478	20	74	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	22	58	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MSSHTKKPPS STASQDQQTL KCPRCNSSNT KFCYYNNYSL SQPRHFCKSC RRYWTRGGSL 60 RNVPIGGGCR KTKKSIKPNI MAPSSSSAQR FFFSTMEEAS KFFPPPTAMD FQLAELSLNK 120 INDLQLMNNQ EVLGLRTTME QVGTTPVDVG SGLTLTGFGV YNTNNSSHSP ATFTTDENLA 180 TSIETLSCLN QDLHWRLQQQ RMAMFFGNSK EETVVVERPQ PLLYRNLEIV NSSPSPTTKK 240 GENQTEWYFG NNNDNERVIN NKDNNKTGGS DQWNNGIQAW TDLNHYN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189266	1e-105	AC189266.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB022L12, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009130518.1	0.0	PREDICTED: dof zinc finger protein DOF5.7-like
Swissprot	Q9LSL6	1e-151	DOF57_ARATH; Dof zinc finger protein DOF5.7
TrEMBL	M4ESS3	0.0	M4ESS3_BRARP; Uncharacterized protein
STRING	Bra031853.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4950	28	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65590.1	1e-154	Dof family protein

Publications ? help Back to Top
Castorina G,Fox S,Tonelli C,Galbiati M,Conti L A novel role for STOMATAL CARPENTER 1 in stomata patterning. BMC Plant Biol., 2016. 16(1): p. 172 [PMID:27484174]