PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC7086_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | RAV | ||||||||
Protein Properties | Length: 362aa MW: 41503.4 Da PI: 10.5627 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 42 | 2.3e-13 | 80 | 128 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f +eeAa ++ a++k++g RrC7086_p1 80 SKYKGVVPQP-NGRWGAQIYVK-----HQRVWLGTFNDEEEAAHSYDIAARKFRG 128 89****9888.8*********3.....5*************************98 PP | |||||||
2 | B3 | 104.3 | 6.5e-33 | 201 | 300 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+kv tpsdv+k++rlv+pk+ ae+h +++ ++++ + +ed +g++W+++++y+++s++yvltkGW++Fvk+++L++gD+v+F+++ s+++l+++ RrC7086_p1 201 FEKVVTPSDVGKLNRLVIPKHQAEKHfplpSLSVNKGVLINFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVTFERSTGSDRQLCIG 299 99****************************7777899**************************************************887799888887 PP E CS B3 96 v 96 + RrC7086_p1 300 W 300 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.11E-24 | 80 | 135 | No hit | No description |
Pfam | PF00847 | 1.7E-6 | 80 | 128 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.81E-17 | 80 | 136 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.9E-20 | 81 | 136 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.1E-27 | 81 | 142 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.941 | 81 | 136 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 2.4E-40 | 195 | 305 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.09E-32 | 198 | 299 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.24E-29 | 200 | 298 | No hit | No description |
PROSITE profile | PS50863 | 14.522 | 201 | 304 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.1E-27 | 201 | 304 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-29 | 201 | 300 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MTSQSPVPSL NNLLSRYNVT KTCLYRFFLL VRREFFYFGI FLTRNCNRHK VFCSSTSAVR 60 KRWKQRRNGV ETDSRKLPSS KYKGVVPQPN GRWGAQIYVK HQRVWLGTFN DEEEAAHSYD 120 IAARKFRGRD AVVNFKTFLT AEEDDNGELC FLEAHSKAEI VDMLRKHTYA EELAQSNKRN 180 GANTNTTTQN DTVLRTREVL FEKVVTPSDV GKLNRLVIPK HQAEKHFPLP SLSVNKGVLI 240 NFEDVTGKVW RFRYSYWNSS QSYVLTKGWS RFVKEKNLRA GDVVTFERST GSDRQLCIGW 300 KIRSGPSKNP VQVVVRLFGV DIFNVTSAKP SNVVDACGGK RSRDVDMFAL RCSKKHAIIN 360 AL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 1e-60 | 198 | 305 | 11 | 119 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018468331.1 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription repressor RAV2 | ||||
Swissprot | P82280 | 1e-173 | RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2 | ||||
TrEMBL | A0A398AA57 | 0.0 | A0A398AA57_BRACM; Uncharacterized protein | ||||
STRING | Bra038346.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM848 | 27 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68840.2 | 1e-175 | related to ABI3/VP1 2 |