PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC707_p8
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 352aa    MW: 38902.7 Da    PI: 7.9128
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC707_p8genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.61.2e-093457326
               S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
               ++ C ++++t tCk+G+ CkF H+
  RrC707_p8 34 EKDCTHYMQTRTCKFGEGCKFDHP 57
               678********************8 PP
2zf-CCCH34.63.1e-1183109127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                ++++ C+++ +t  CkyG rCkF+H++
  RrC707_p8  83 PGEPDCPYYVKTQRCKYGVRCKFNHPK 109
                5789*********************96 PP
3zf-CCCH39.59.5e-13128152327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                +++C f+++tG Ck+G +CkF+H++
  RrC707_p8 128 EAPCTFYMKTGKCKFGLTCKFNHPK 152
                789********************96 PP
4zf-CCCH33.19.4e-11254272826
                GGGGTS--TTTTT-SS-SS CS
    zf-CCCH   8 ffartGtCkyGdrCkFaHg 26 
                ++++tG+Ck+G+rC+F+H+
  RrC707_p8 254 YYMKTGECKFGERCRFHHP 272
                9*****************8 PP
5zf-CCCH41.81.7e-13304326527
                --SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                +C+++++tGtCkyG++CkF H+p
  RrC707_p8 304 NCPYYMKTGTCKYGATCKFDHPP 326
                7********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.5213159IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-53258IPR000571Zinc finger, CCCH-type
SMARTSM003560.413358IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-73457IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.2E-43756IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.87382110IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-582109IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-884109IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-587109IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-488107IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.084125153IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5125152IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-6128153IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-10128152IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-5130151IPR000571Zinc finger, CCCH-type
SMARTSM003560.4250273IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-5254277IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-8254272IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-5254274IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.718254274IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.375299327IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-7299326IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-11303326IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-6303326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.3E-6305324IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MGQTEAWYTT DYLTKRLKLE TTSHLPVYPQ RAGEKDCTHY MQTRTCKFGE GCKFDHPIWV  60
PEGGIPDWKE APVVPNDEYP ERPGEPDCPY YVKTQRCKYG VRCKFNHPKT AAAVTVENPD  120
ALPERPSEAP CTFYMKTGKC KFGLTCKFNH PKDIQLPSSS QDNGSTEAVT SDPDAINNPH  180
VTFAPAAYHN SKGLPVRPGE YGATCRYNHP ERTAFTPQAT GINYPLVSPT AASVNLGLIN  240
SAASLYQTLA QPTYYMKTGE CKFGERCRFH HPADRLNATS KQAPQQPNVK LSLAGYPRRE  300
GAQNCPYYMK TGTCKYGATC KFDHPPPGEV MAKTASEADA PPPGEGTDTT TQ
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018485902.10.0PREDICTED: zinc finger CCCH domain-containing protein 37-like
SwissprotQ941Q30.0C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A0D3CKU30.0A0A0D3CKU3_BRAOL; Uncharacterized protein
STRINGBo5g133310.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97612836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0floral homeotic protein (HUA1)