PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7066_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 519aa    MW: 56986.3 Da    PI: 6.5768
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7066_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.61.4e-29279337259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 +Dg++WrKYGqK+ kg+++pr+Y+rCt+a gCpv+k+v+r+ae+ +++++tYeg+Hnh+
  RrC7066_p1 279 SDGCHWRKYGQKMAKGNPCPRAYFRCTMAvGCPVRKQVQRCAEERTILITTYEGNHNHP 337
                 7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.5E-32263339IPR003657WRKY domain
SuperFamilySSF1182907.72E-27271339IPR003657WRKY domain
PROSITE profilePS5081128.277273339IPR003657WRKY domain
SMARTSM007743.3E-35278338IPR003657WRKY domain
PfamPF031062.1E-25280337IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MFRFPVSLGG PHDNPKQPQP SDEQPHRAMM DEVDFFRSEK RDDQNIVTDE TNRVHVKREN  60
SRVVDDDDRS TGINTGLNLL TAHTGSDESM VDDGLSVDME EKRSKIENVQ LREELKKAAE  120
EIQRLKEVLS QTTNNFNSLQ MQLVAVMRQQ EEHHHLAATE SKDKPNKRHE APDMVPRQFI  180
ELGLPTAEVS SEERTTVRSG SPPSLLENSS SRQRGKRLLE REESPDTESN GWANPNKVSK  240
HNVSSNNCNG NAIDQSAAEA TMRKARVSVR ARSEATTLSD GCHWRKYGQK MAKGNPCPRA  300
YFRCTMAVGC PVRKQVQRCA EERTILITTY EGNHNHPLPP AAMYMASTTT AAASMLLSGS  360
TMSSQDGLMN PPNLFARTML PCSSNMATIS ASAPFPTITL DLTESASNIN SQTNNNPLMQ  420
FPQRSGFAES NQSGLPQMMG QALYYSQQQT KFSGLQIPSQ SLNAGENVTA ATAAIAANPN  480
FAAALAAALT SIINGPNNHQ NGDSNNGINN VTTSSVERQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-20265341176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00428DAPTransfer from AT4G04450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ3841100.0FJ384110.1 Brassica napus cultivar Westar WRKY transcription factor 42 (WRKY42) mRNA, WRKY42-2 allele, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018473199.10.0PREDICTED: WRKY transcription factor 42-like
SwissprotQ9XEC30.0WRK42_ARATH; WRKY transcription factor 42
TrEMBLA0A397ZYS70.0A0A397ZYS7_BRACM; Uncharacterized protein
STRINGBra000793.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105728107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.10.0WRKY family protein