PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC702_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 181aa    MW: 19958.3 Da    PI: 9.1071
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC702_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.47.6e-183988255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                ++GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  RrC702_p1 39 NFRGVRMRQ-WGKWVSEIREPRK---KSRIWLGTFSTPEMAARAHDVAALAIKG 88
               69****998.**********843...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.18E-333898No hitNo description
PfamPF008475.5E-123888IPR001471AP2/ERF domain
PROSITE profilePS5103222.5633996IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-213997IPR016177DNA-binding domain
SMARTSM003803.2E-3839102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.1E-323997IPR001471AP2/ERF domain
PRINTSPR003675.0E-104051IPR001471AP2/ERF domain
PRINTSPR003675.0E-106278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MQDSSLPRSE RNLRSPAPER TGKNSKSKTE KKSVSKHPNF RGVRMRQWGK WVSEIREPRK  60
KSRIWLGTFS TPEMAARAHD VAALAIKGGS AHLNFPELAC HLPRPASADP KDIQAAAAAA  120
AVEWKAPESP SSTATSSMTS SSVADDAFSD LPDLLVDVND HKVDGFWDSF PYDEPFFMGN  180
Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1635961072Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018457809.11e-129PREDICTED: ethylene-responsive transcription factor ERF039
SwissprotQ9SUK85e-95ERF39_ARATH; Ethylene-responsive transcription factor ERF039
TrEMBLA0A398AQD91e-110A0A398AQD9_BRACM; Uncharacterized protein
TrEMBLM4FG651e-110M4FG65_BRARP; Uncharacterized protein
STRINGBra040092.1-P1e-111(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24922374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16750.13e-86ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]