PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC6989_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 417aa MW: 47390 Da PI: 6.5063

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC6989_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.6	2.1e-52	16	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 l pGfrFhPtdeelv++yLk+kv++ +l++ evi+++diyk++PwdLp+ + ++ekewyf+++rd+ky++++r+nr+t +g+Wkatg+d++++s+ +++ RrC6989_p1 16 LLPGFRFHPTDEELVSFYLKRKVQHYPLSI-EVIRQLDIYKYDPWDLPRFAMTGEKEWYFYCPRDRKYRNSSRPNRVTGAGFWKATGTDRPIYSSeGNK 113 579*************************.99***********7666789***********************************95666 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +glkk+Lvfy+gra kg+ktdW+mhe+rl RrC6989_p1 114 CIGLKKSLVFYQGRAAKGVKTDWMMHEFRL 143 7*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.12E-59	12	175	IPR003441	NAC domain
PROSITE profile	PS51005	57.424	16	175	IPR003441	NAC domain
Pfam	PF02365	3.3E-25	18	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009733	Biological Process	response to auxin
GO:0045770	Biological Process	positive regulation of asymmetric cell division
GO:0048103	Biological Process	somatic stem cell division
GO:0048829	Biological Process	root cap development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence Send to blast
MGERNDDGDQ KMEEVLLPGF RFHPTDEELV SFYLKRKVQH YPLSIEVIRQ LDIYKYDPWD 60 LPRFAMTGEK EWYFYCPRDR KYRNSSRPNR VTGAGFWKAT GTDRPIYSSE GNKCIGLKKS 120 LVFYQGRAAK GVKTDWMMHE FRLPSFSEPS PSSKRFFDSH ISPNDSWAIC RIFKKSNTTT 180 LRSLSHSFVS SLPSDTSIDT MSNQKPSNTS HFSSDLKTSS HIQFHHEKTN NIPKTSSCRT 240 PLVATMSPFS YLDFTSYEKP TNVFNPVSSL DQQYLTSLFL APQEIQAQLP MLASSNEFPS 300 FLLNMPSSDS SFLEECTSEI DLSAVLAQEQ CPALVSLPQE YQEKGIGGNG EVKNMHSFNE 360 DHHSDCTTLK FGDIGSTVEE KHPHHCQDVK HNMTLLESYY SSLSSINGDL PACFSAT

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence Send to blast

MGERNDDGDQ KMEEVLLPGF RFHPTDEELV SFYLKRKVQH YPLSIEVIRQ LDIYKYDPWD  60
LPRFAMTGEK EWYFYCPRDR KYRNSSRPNR VTGAGFWKAT GTDRPIYSSE GNKCIGLKKS  120
LVFYQGRAAK GVKTDWMMHE FRLPSFSEPS PSSKRFFDSH ISPNDSWAIC RIFKKSNTTT  180
LRSLSHSFVS SLPSDTSIDT MSNQKPSNTS HFSSDLKTSS HIQFHHEKTN NIPKTSSCRT  240
PLVATMSPFS YLDFTSYEKP TNVFNPVSSL DQQYLTSLFL APQEIQAQLP MLASSNEFPS  300
FLLNMPSSDS SFLEECTSEI DLSAVLAQEQ CPALVSLPQE YQEKGIGGNG EVKNMHSFNE  360
DHHSDCTTLK FGDIGSTVEE KHPHHCQDVK HNMTLLESYY SSLSSINGDL PACFSAT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-57	16	179	17	169	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-57	16	179	17	169	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-57	16	179	17	169	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-57	16	179	17	169	NO APICAL MERISTEM PROTEIN
3swm_A	6e-57	16	179	20	172	NAC domain-containing protein 19
3swm_B	6e-57	16	179	20	172	NAC domain-containing protein 19
3swm_C	6e-57	16	179	20	172	NAC domain-containing protein 19
3swm_D	6e-57	16	179	20	172	NAC domain-containing protein 19
3swp_A	6e-57	16	179	20	172	NAC domain-containing protein 19
3swp_B	6e-57	16	179	20	172	NAC domain-containing protein 19
3swp_C	6e-57	16	179	20	172	NAC domain-containing protein 19
3swp_D	6e-57	16	179	20	172	NAC domain-containing protein 19
4dul_A	5e-57	16	179	17	169	NAC domain-containing protein 19
4dul_B	5e-57	16	179	17	169	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018489148.1	0.0	PREDICTED: protein FEZ-like
Swissprot	Q9ZVH0	0.0	FEZ_ARATH; Protein FEZ
TrEMBL	A0A0D3CDG9	0.0	A0A0D3CDG9_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6F171	0.0	A0A3P6F171_BRAOL; Uncharacterized protein
STRING	Bo5g045190.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM306	28	200

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	0.0	NAC family protein

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]