PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC690_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family TCP
Protein Properties Length: 350aa    MW: 40061.7 Da    PI: 6.3286
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC690_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP127.61.3e-39842302129
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....ssssasec....eaesssssasnsssg..... 88 
                a+kkdrhski T +g+RdRRvRls+ +a++fFdLqd+LGfdk+skt++WLl+++k+aikel++     + +++  +     ++++++++++++ +     
  RrC690_p4  84 AVKKDRHSKIQTGQGLRDRRVRLSIGIARQFFDLQDMLGFDKASKTLDWLLKKSKRAIKELVQEkklnN-TTED-FrnigGEVEEEEEEEEDGDKrvvyg 181
                89**************************************************************77641.2221.1233422222222222222256677 PP

        TCP  89 .......kaaksaakskksqksaasalnlak.esrakarararertrek 129
                       ++   + k+ +++k + +++n++   srakar +a+e tre 
  RrC690_p4 182 sspdsckEEVVCEVKKAQKRKTKIEVSNISSkGSRAKARGKAKEITREM 230
                77755654444444555555555556666666999*******9999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.7E-3985230IPR005333Transcription factor, TCP
PROSITE profilePS5136934.5286144IPR017887Transcription factor TCP subgroup
PROSITE profilePS513708.883213230IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MSFSNNDYNN GNNGVYPLSL YLSPLAGHQD IIRSPYNHQP PPSPGHMASA VPESLINYMT  60
FSSNHAVNQQ RFEIPEVSRE IKKAVKKDRH SKIQTGQGLR DRRVRLSIGI ARQFFDLQDM  120
LGFDKASKTL DWLLKKSKRA IKELVQEKKL NNTTEDFRNI GGEVEEEEEE EEDGDKRVVY  180
GSSPDSCKEE VVCEVKKAQK RKTKIEVSNI SSKGSRAKAR GKAKEITREM TYDHPETISE  240
ITQQTEIMDQ PKRSIIFNEG EDMTHSLYKE ATQEFDSQEC ILSKTKVNLP TNMDHSYNQN  300
YGTFMLKDQG SSSNYNNILP QNLDFYYDQN PFIDQPFCAA TNTSFPWGFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-1391144154Putative transcription factor PCF6
5zkt_B3e-1391144154Putative transcription factor PCF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194200VKKAQKR
Functional Description ? help Back to Top
Source Description
UniProtInvolved in petal morphogenesis. {ECO:0000269|PubMed:17940055}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444831.10.0PREDICTED: transcription factor TCP1
SwissprotQ9FYG71e-155TCP1_ARATH; Transcription factor TCP1
TrEMBLM4CJ280.0M4CJ28_BRARP; Uncharacterized protein
STRINGBra004212.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67332744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.21e-147TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]