PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6899_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Dof
Protein Properties Length: 285aa    MW: 31280.5 Da    PI: 9.5825
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6899_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.65.6e-382482462
      zf-Dof  4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                 +lkcprCds+ntkfCyynnyslsqPryfCkaC+ryWt+GG+lrnvPvGg+ rknk+++
  RrC6899_p2 24 PQLKCPRCDSSNTKFCYYNNYSLSQPRYFCKACKRYWTRGGTLRNVPVGGSYRKNKRVK 82
                689*****************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027013.3E-332580IPR003851Zinc finger, Dof-type
ProDomPD0074787.0E-262680IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.7232680IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102864IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MIVAPSHQQQ QQQQQPQQQQ PHPPQLKCPR CDSSNTKFCY YNNYSLSQPR YFCKACKRYW  60
TRGGTLRNVP VGGSYRKNKR VKRPATSTAT STASATTSSS PNNPHHQISQ FSSMNHHPLF  120
YGLSDDVSSC NNLPMIPSRF RDTSKTPTSG LESEFLSSGF SGLSALGLGF PHHMSHDHTV  180
NGSFINNSTT NKPFLLSGLF GSSVSSSSST LLQSQHKPIN NGGEMMGQSH LQTLASLQHV  240
GGNTDDVNKE RKFDQISGNI NGFMSSSSLD PSNYNSIWNN ASADL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3530650.0AK353065.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-20-D16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018447882.11e-163PREDICTED: dof zinc finger protein DOF1.4-like
SwissprotQ9FZA41e-125DOF14_ARATH; Dof zinc finger protein DOF1.4
TrEMBLA0A078JJD91e-143A0A078JJD9_BRANA; BnaCnng51540D protein
TrEMBLA0A0D3D6961e-143A0A0D3D696_BRAOL; Uncharacterized protein
STRINGBo7g048220.11e-144(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47092650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28310.15e-94Dof family protein