PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6871_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 424aa    MW: 48264.2 Da    PI: 7.1934
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6871_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM135.73.1e-4261353128
         NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kg 97 
                 +G+rF+Pt eel+++yLk+k+ g++  ++++i+ev+i+++ePw Lp  +k+++++  wyfFs+++ ++a+++ ++r+t sgyWkatg d+++++   +g
  RrC6871_p1   6 VGYRFSPTGEELINHYLKNKILGNSWLVDHAISEVNICRYEPWFLPslSKLESKDLVWYFFSPKEYTSAKKNVTKRTTPSGYWKATGVDRKIKDMrgNG 104
                 7************************999889***************5447777888************************************9987778 PP

         NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  ++g+kktLv+y+gr p+g+ t Wvmhey++
  RrC6871_p1 105 VEIGIKKTLVYYEGRVPNGVWTPWVMHEYHI 135
                 88***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100546.4774153IPR003441NAC domain
SuperFamilySSF1019412.35E-475153IPR003441NAC domain
PfamPF023656.0E-246135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MEKNLVGYRF SPTGEELINH YLKNKILGNS WLVDHAISEV NICRYEPWFL PSLSKLESKD  60
LVWYFFSPKE YTSAKKNVTK RTTPSGYWKA TGVDRKIKDM RGNGVEIGIK KTLVYYEGRV  120
PNGVWTPWVM HEYHITSLPL NQRTYVICQV MYKGDDGDSL YGNNSNEPSS SMVSDSNTFR  180
VINPSPEQGQ EDGMSMNDLL IPLNQQEDLS SYDVFNQNKI FTDNNNYYPQ TPYDDDYWKG  240
LLDYNGGNFE DVFGNQELIM QENQSNHRPK RPLTGIIFDD GSSDSDAESI SATSYRGTSS  300
QGDSDGSVDE IMSSRKGSSK GIQTSINGKT RESRFTRRTI PSKQEVKEGK SKAREDASLD  360
KKALSSMVKT EKKCWFITEK AMQRNHKNPP YIYLMNMIIG LILFVAVIGN IIWSFHVAMV  420
KSGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-26713518140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in salt stress response during seed germination and seedling growth. Binds the auxin-responsive IAA30 gene promoter and may serve as a molecular link that interconnects a developmental feedback loop of auxin signaling with a salt signal transduction pathway during seed germination (PubMed:21450938). {ECO:0000269|PubMed:21450938}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00426DAPTransfer from AT4G01550Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress and abscisic acid (ABA) in roots. {ECO:0000269|PubMed:21450938}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444884.10.0PREDICTED: NAC domain-containing protein 69-like
SwissprotQ9M1261e-175NAC69_ARATH; NAC domain-containing protein 69
TrEMBLA0A3P6CYT10.0A0A3P6CYT1_BRAOL; Uncharacterized protein
STRINGBra008553.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19821971
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01550.11e-173NAC domain containing protein 69
Publications ? help Back to Top
  1. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  2. He L, et al.
    Arabidopsis ANAC069 binds to C[A/G]CG[T/G] sequences to negatively regulate salt and osmotic stress tolerance.
    Plant Mol. Biol., 2017. 93(4-5): p. 369-387
    [PMID:27975189]