PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC683_p3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ERF | ||||||||
Protein Properties | Length: 328aa MW: 36053.9 Da PI: 4.9176 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.2 | 1.3e-20 | 115 | 164 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp+e +r++lg+f taeeAa+a++aa+++++g RrC683_p3 115 QYRGIRQRP-WGKWAAEIRDPKE---GARIWLGTFSTAEEAARAYDAAARRIRG 164 69*******.**********966...3*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.80E-18 | 115 | 173 | No hit | No description |
PROSITE profile | PS51032 | 24.46 | 115 | 172 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.7E-38 | 115 | 178 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-22 | 115 | 174 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.8E-33 | 115 | 173 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.5E-12 | 116 | 127 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.8E-13 | 116 | 164 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.5E-12 | 138 | 154 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MCGGAIISDF IPSSKSRRVT SEFIWPDLKK KKKNAKGLKK SLEKRSSHSD LDDEFEADFQ 60 RFKDDLSVDG DDVFDDVFAD VKPLVSTAVS SAAAACGKKV ADSNGQAAKR KRKNQYRGIR 120 QRPWGKWAAE IRDPKEGARI WLGTFSTAEE AARAYDAAAR RIRGSKAKVN FPVESLTFSQ 180 KPVAKPNPNL ASVQNFDNMG FMEDTEQGNN NNNNSQFALT NSIDAGGGNG YHQYFSSDQG 240 SNSFGWSDQA PITPEISSAF INNNNSALFV EDANPAKKLK SMDFEAPQWD SSLDFLSGDA 300 VVTEDNGENP MDLLWSIDEI ESMIGGVF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-23 | 115 | 173 | 2 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 28 | 39 | KKKKKNAKGLKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the activation of hypoxic gene expression and in ethylene response. Partially redundant with RAP2-2. Acts as a downstream regulator in the ethylene signaling pathway. {ECO:0000269|PubMed:22020282, ECO:0000269|PubMed:22530619}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by hypoxia but not by ethylene. {ECO:0000269|PubMed:22020282}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018493222.1 | 1e-168 | PREDICTED: ethylene-responsive transcription factor RAP2-12-like | ||||
Swissprot | Q9SSA8 | 1e-132 | RA212_ARATH; Ethylene-responsive transcription factor RAP2-12 | ||||
TrEMBL | A0A1J3DI34 | 1e-136 | A0A1J3DI34_NOCCA; Ethylene-responsive transcription factor RAP2-12 | ||||
STRING | XP_006392736.1 | 1e-132 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.3 | 1e-111 | related to AP2 12 |