PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6772_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 140aa    MW: 15161.3 Da    PI: 10.0006
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6772_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.96.8e-193265134
        GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                C+ Cgt+kTplWR gp g+k+LCnaCG+++rkk+
  RrC6772_p3 32 CADCGTSKTPLWRGGPAGPKSLCNACGIRNRKKR 65
                ********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.6E-112679IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.42662IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-112974No hitNo description
Gene3DG3DSA:3.30.50.106.6E-153065IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.54E-113167No hitNo description
PfamPF003206.4E-173265IPR000679Zinc finger, GATA-type
PROSITE patternPS0034403257IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MLDHSEKDSE RRRGGEDVIE QNKACCNDKK TCADCGTSKT PLWRGGPAGP KSLCNACGIR  60
NRKKRRGGGE DKKQPKKPNS CGGGGGGGDL KRNPKFGESL RMMDLGMTKR STVEKQLRKL  120
GEEEQAAVLL MALSYGSVYA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00554DAPTransfer from AT5G49300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018465077.11e-86PREDICTED: GATA transcription factor 16
SwissprotQ9FJ102e-61GAT16_ARATH; GATA transcription factor 16
TrEMBLM4DVV64e-72M4DVV6_BRARP; Uncharacterized protein
STRINGBra020650.1-P7e-73(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50502652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.12e-49GATA transcription factor 16
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]