PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6732_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 409aa    MW: 46702.4 Da    PI: 5.9405
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6732_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.34.4e-51541792128
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
                 +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d+++ s++++++
  RrC6732_p1  54 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPAFAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRTIRSETDRQI 151
                 79***************************.89***************8777899********************************************* PP

         NAM 101 glkktLvfykgrapkgektdWvmheyrl 128
                 glkktLvfy+g+apkg++t+W+m+eyrl
  RrC6732_p1 152 GLKKTLVFYSGKAPKGTRTSWIMNEYRL 179
                 **************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-5653200IPR003441NAC domain
PROSITE profilePS5100555.98453200IPR003441NAC domain
PfamPF023652.3E-2555179IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MTIVSSTTSI ITMMSNQVNN NTEKGIEEDA HRGGHESRVQ NDDEADDHDQ DMVMPGFRFH  60
PTEEELIEFY LRRKVEGKRF NVELITFLDL YRYDPWELPA FAAIGEKEWY FYVPRDRKYR  120
NGDRPNRVTT SGYWKATGAD RTIRSETDRQ IGLKKTLVFY SGKAPKGTRT SWIMNEYRLP  180
HHETEKYQKA ETSLCRVYKR PGVEDHPSLP RSTSTRQHNH NSSSSSRLAV RQQQQYLPSS  240
SNNSDNNLNN NNNLEKHSTE YSGDGSTITT TNSNSDVTIA LANQNIYRPM PYGASNTTII  300
SNQEDDETAI VDDLQRLVNY QITDGGSNIN HQYYQIAEQF HNQQQLNANA NALQLVTADT  360
TATLTPQTQA ALTMNMIPTG TIPNNALWEM WNPLVPDGNK DPYTSIPFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-56442008165NO APICAL MERISTEM PROTEIN
1ut4_B1e-56442008165NO APICAL MERISTEM PROTEIN
1ut7_A1e-56442008165NO APICAL MERISTEM PROTEIN
1ut7_B1e-56442008165NO APICAL MERISTEM PROTEIN
3swm_A1e-564420011168NAC domain-containing protein 19
3swm_B1e-564420011168NAC domain-containing protein 19
3swm_C1e-564420011168NAC domain-containing protein 19
3swm_D1e-564420011168NAC domain-containing protein 19
3swp_A1e-564420011168NAC domain-containing protein 19
3swp_B1e-564420011168NAC domain-containing protein 19
3swp_C1e-564420011168NAC domain-containing protein 19
3swp_D1e-564420011168NAC domain-containing protein 19
4dul_A1e-56442008165NAC domain-containing protein 19
4dul_B1e-56442008165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0008740.0BT000874.1 Arabidopsis thaliana clone C104984 putative NAM (no apical meristem) protein (At2g02450) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018435193.10.0PREDICTED: NAC domain-containing protein 35-like
SwissprotQ9ZVP80.0NAC35_ARATH; NAC domain-containing protein 35
TrEMBLA0A078FN110.0A0A078FN11_BRANA; BnaC02g34540D protein
TrEMBLA0A3P6DUV40.0A0A3P6DUV4_BRAOL; Uncharacterized protein
STRINGBo2g136280.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54362750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.20.0NAC domain containing protein 35
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Okajima K
    Molecular mechanism of phototropin light signaling.
    J. Plant Res., 2016. 129(2): p. 149-57
    [PMID:26815763]
  3. Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M
    Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii.
    J Phys Chem B, 2018. 122(6): p. 1801-1815
    [PMID:29355019]