PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC6713_p3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB | ||||||||
Protein Properties | Length: 215aa MW: 24599.2 Da PI: 6.3136 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23 | 1.9e-07 | 5 | 47 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 WT Ed+ + +a +++ g +W++Ia ++ +++ ++++++ RrC6713_p3 5 QWTRSEDKMFEQALVLFPEGspnRWERIADQLQ--KSAGEVREHY 47 7*******************************9..8********9 PP | |||||||
2 | Myb_DNA-binding | 41.5 | 3.1e-13 | 97 | 141 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W++ E++l++ + k++G+g+W++I+r + +Rt+ q+ s+ qky RrC6713_p3 97 PWSENEHKLFLIGLKRYGKGDWRSISRNVVVTRTPTQVASHAQKY 141 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 8.861 | 1 | 55 | IPR017930 | Myb domain |
SMART | SM00717 | 5.0E-8 | 2 | 53 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.68E-12 | 4 | 59 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.5E-6 | 5 | 48 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.08E-5 | 6 | 51 | No hit | No description |
PROSITE profile | PS51294 | 17.97 | 90 | 146 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.9E-16 | 91 | 147 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.2E-16 | 93 | 145 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.5E-8 | 94 | 144 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.3E-10 | 96 | 140 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.14E-7 | 97 | 142 | No hit | No description |
Pfam | PF00249 | 3.7E-11 | 97 | 141 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MASSQWTRSE DKMFEQALVL FPEGSPNRWE RIADQLQKSA GEVREHYEAL VHDVLEIDSG 60 RVDVPDYMDD SAAGWDSAGQ ISFGSKHGET ERKRGTPWSE NEHKLFLIGL KRYGKGDWRS 120 ISRNVVVTRT PTQVASHAQK YFLRQNSVKK ERKRSSIHDI TTVDTNLAMP GSNMDWSGQQ 180 ESSVQTQHQQ QQSMSEFGQE LMTPGGHYEE FGYRM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00055 | PBM | Transfer from AT5G04760 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018472565.1 | 1e-161 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 4e-56 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A397ZYQ0 | 1e-148 | A0A397ZYQ0_BRACM; Uncharacterized protein | ||||
STRING | Bo3g002960.1 | 1e-147 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5127 | 27 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 1e-118 | MYB family protein |
Publications ? help Back to Top | |||
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