PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC6691_p3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ERF | ||||||||
Protein Properties | Length: 304aa MW: 33572.9 Da PI: 6.582 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59 | 1.1e-18 | 34 | 84 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 ++GVr++ +g+WvAeIr+p + r +r +lg+f t eAa a+++a+kkl+g+ RrC6691_p3 34 TFRGVRQRT-WGKWVAEIREP---N-RgTRLWLGTFNTSVEAAMAYDEAAKKLYGH 84 69****999.**********8...3.35*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.94E-27 | 33 | 89 | No hit | No description |
PROSITE profile | PS51032 | 20.31 | 34 | 91 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-33 | 34 | 97 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-28 | 34 | 90 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.21E-20 | 34 | 90 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 8.4E-14 | 35 | 84 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-9 | 35 | 46 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-9 | 57 | 73 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MEEEELPPAK KRNVGRSRKG CMKGKGGPEN AKCTFRGVRQ RTWGKWVAEI REPNRGTRLW 60 LGTFNTSVEA AMAYDEAAKK LYGHEAKLNL LHPQQQQQKQ GVNRNLSFSG HGSGSWAYHL 120 DTVRGLDLGL GTSNGSRGFS FLQEDHHHYS SHYLSSSGSN LSWLLPIRSN SQDQESVNAT 180 SGCGSEGGGG YTFSTKLKPQ NLIMTHPDYG SSNGVWSRFL VGQENNTQYD VSSSCGSSSD 240 NKESVSVPSD GGGEGLHRPE VEEGTGYLEM DNLLEIDDLG LLIGKNGDFK NWCCDEFQHA 300 WNWF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-15 | 35 | 90 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. {ECO:0000250, ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018443213.1 | 0.0 | PREDICTED: dehydration-responsive element-binding protein 2G-like | ||||
Swissprot | P61827 | 1e-154 | DRE2G_ARATH; Dehydration-responsive element-binding protein 2G | ||||
TrEMBL | A0A078GG20 | 1e-179 | A0A078GG20_BRANA; BnaC09g39350D protein | ||||
TrEMBL | A0A0D3EED9 | 1e-179 | A0A0D3EED9_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g155940.1 | 1e-179 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9978 | 20 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18450.1 | 1e-124 | ERF family protein |
Publications ? help Back to Top | |||
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