PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC6678_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 390aa MW: 44403.1 Da PI: 9.6262 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.8 | 4.4e-06 | 69 | 91 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H RrC6678_p1 69 YVCEICNQGFQRDQNLQMHRRRH 91 9*********************9 PP | |||||||
2 | zf-C2H2 | 13.9 | 0.00016 | 148 | 169 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C+ C+k + +s++k H++t+ RrC6678_p1 148 ICERCSKGYAVQSDYKAHLKTC 169 7*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.24E-5 | 66 | 92 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.5E-5 | 68 | 91 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12874 | 0.019 | 69 | 87 | No hit | No description |
SMART | SM00355 | 0.0052 | 69 | 91 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.97 | 69 | 91 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 71 | 91 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 160 | 111 | 141 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 110 | 147 | 174 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009630 | Biological Process | gravitropism | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010601 | Biological Process | positive regulation of auxin biosynthetic process | ||||
GO:0048444 | Biological Process | floral organ morphogenesis | ||||
GO:2000012 | Biological Process | regulation of auxin polar transport | ||||
GO:2000904 | Biological Process | regulation of starch metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MIDYERSNNT KNINHHRNPH PSSSSSGLLP DGNEAAVTQK RKRRPAGTPD PEAEVVSLSP 60 RTLLESDRYV CEICNQGFQR DQNLQMHRRR HKVPWKLLKR ETNEEVKKRV YVCPEPTCLH 120 HNPCHALGDL VGIKKHFRRK HSNHKQWICE RCSKGYAVQS DYKAHLKTCG TRGHSCDCGR 180 HQDNCTMRQT QTSSQRLQQQ QQHTSNATQT ALTSENIDLS IGPVLPRHPF LRQSPPSDQQ 240 PSGLLYPFVG SSATTGSGIE LQLLPSRVRA DDTSLSLSIG METTMSSYEK GETSLLLGER 300 EEAKRQIEIA ELEFAEAKRI RQHARGELHK AQLYREEASR RTSATIMQIT CHDCKKYFQS 360 IIFQGPVRQQ STSPGKILPG LTKPNIQYRW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:21556057, ECO:0000269|PubMed:24039602}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189489 | 1e-172 | AC189489.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084K02, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018445099.1 | 0.0 | PREDICTED: protein indeterminate-domain 14-like | ||||
Swissprot | Q9C9X7 | 0.0 | IDD14_ARATH; Protein indeterminate-domain 14 | ||||
TrEMBL | A0A078EZ84 | 0.0 | A0A078EZ84_BRANA; BnaA07g24790D protein | ||||
TrEMBL | A0A397YPQ5 | 0.0 | A0A397YPQ5_BRACM; Uncharacterized protein | ||||
TrEMBL | M4CIL6 | 0.0 | M4CIL6_BRARP; Uncharacterized protein | ||||
STRING | Bra004050.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM693 | 28 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68130.1 | 0.0 | indeterminate(ID)-domain 14 |
Publications ? help Back to Top | |||
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