PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC658_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Trihelix

Protein Properties

Length: 365aa MW: 42564.7 Da PI: 4.6197

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC658_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	40.8	5.6e-13	90	172	4	86
trihelix 4 kqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +qe +L+e+ ++ +l+r++l+ +W ev++k+ +e ers +qC+ +nl+++ykk++ +k + ss++++f++l+ RrC658_p2 90 EQEAFVLLEVWGDRFLQLGRRSLRNEDWNEVAEKVsEELRSERSETQCRRMVDNLKRKYKKERVKVEK-SGLGSSKWSFFNKLD 172 688899***************************777889*****************987776.478999*****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.0E-18	90	173	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MGDSEDETGY PKKFYPLNRQ THPMYTRPIP KRHAYYHEEE EEEDDEEEQE DNGGGGGYSH 60 RFQKRLKPTK PVPSGYDFST SGGPSEAKAE QEAFVLLEVW GDRFLQLGRR SLRNEDWNEV 120 AEKVSEELRS ERSETQCRRM VDNLKRKYKK ERVKVEKSGL GSSKWSFFNK LDMLLGGGGS 180 SAKPEFGLAC GVDSGEFVFM NTKVYLEKSN GFDEMMDSPG DSEEDDDEEE EVEYERRRRR 240 KGDDDAASYK LLADSVERFG KVYEKMEKSK KEQMKELEKM RGEFQRDLEL QKKQIVERAQ 300 TEIARLREED EEEEEENHRR DGGGGHESED EVDYYSHDKY LESITFTHQF GTGNLIISFN 360 CKWIP

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MGDSEDETGY PKKFYPLNRQ THPMYTRPIP KRHAYYHEEE EEEDDEEEQE DNGGGGGYSH  60
RFQKRLKPTK PVPSGYDFST SGGPSEAKAE QEAFVLLEVW GDRFLQLGRR SLRNEDWNEV  120
AEKVSEELRS ERSETQCRRM VDNLKRKYKK ERVKVEKSGL GSSKWSFFNK LDMLLGGGGS  180
SAKPEFGLAC GVDSGEFVFM NTKVYLEKSN GFDEMMDSPG DSEEDDDEEE EVEYERRRRR  240
KGDDDAASYK LLADSVERFG KVYEKMEKSK KEQMKELEKM RGEFQRDLEL QKKQIVERAQ  300
TEIARLREED EEEEEENHRR DGGGGHESED EVDYYSHDKY LESITFTHQF GTGNLIISFN  360
CKWIP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018485562.1	0.0	PREDICTED: trihelix transcription factor ASIL2
TrEMBL	A0A398A900	1e-177	A0A398A900_BRACM; Uncharacterized protein
STRING	Bra001951.1-P	1e-173	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9779	27	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	1e-114	Trihelix family protein