PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC6561_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

HSF

Protein Properties

Length: 114aa MW: 13462.2 Da PI: 9.8478

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC6561_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	116.6	1.5e-36	17	109	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 F+ k+y++++d++++ li+w nsf+v+d+ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++ weF++++F +g+k+ll++i RrC6561_p1 17 FVAKTYQMVNDPSTDWLITWGPAHNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEHFLRGQKHLLKNIA 104 9******************999*************************************999.........**************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+k++ RrC6561_p1 105 RRKHA 109 975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	2.6E-55	13	106	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	9.11E-35	14	106	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	6.9E-39	14	106	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.4E-31	17	106	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.9E-19	17	40	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.9E-19	55	67	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	56	80	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.9E-19	68	80	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 114 aa Download sequence Send to blast
MEDDNNNNTS TNVIAPFVAK TYQMVNDPST DWLITWGPAH NSFIVVDPLD FSQRILPAYF 60 KHNNFSSFVR QLNTYGFRKV DPDRWEFANE HFLRGQKHLL KNIARRKHAR GMMY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	4e-28	14	106	17	120	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY056111	1e-113	AY056111.1 Arabidopsis thaliana AT3g24520/MOB24_5 mRNA, complete cds.
GenBank	AY072614	1e-113	AY072614.1 Arabidopsis thaliana AT3g24520/MOB24_5 mRNA, complete cds.
GenBank	HQ322382	1e-113	HQ322382.1 Arabidopsis thaliana heat shock factor (HSF) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018487209.1	1e-80	PREDICTED: heat stress transcription factor C-1
Swissprot	Q9LV52	8e-70	HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBL	M4DEX8	6e-78	M4DEX8_BRARP; Uncharacterized protein
STRING	Bra015050.1-P	1e-78	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM965	28	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24520.1	3e-72	heat shock transcription factor C1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Guan Q,Yue X,Zeng H,Zhu J The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis. Plant Cell, 2014. 26(1): p. 438-53 [PMID:24415771]