PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6550_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 363aa    MW: 41305.3 Da    PI: 8.392
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6550_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding537.9e-171469148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqkyl 48
                     +g W++eEde+l+++++++G g+W+++++  g        + R++k+c++rw +yl
       RrC6550_p1 14 KGLWSPEEDEKLLNYITRHGHGCWSSVPKLAGfvflissrLQRCGKSCRLRWINYL 69
                     678***************************************************97 PP
2Myb_DNA-binding49.87.6e-1675118146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E+ l++++++ lG++ W+ Ia +++ gRt++++k++w++
       RrC6550_p1  75 RGAFSQDEESLIIELHAALGNR-WSQIATRLP-GRTDNEIKNFWNS 118
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-25672IPR009057Homeodomain-like
PROSITE profilePS5129415.609969IPR017930Myb domain
SuperFamilySSF466891.76E-2712116IPR009057Homeodomain-like
SMARTSM007172.4E-111371IPR001005SANT/Myb domain
PfamPF002497.8E-151469IPR001005SANT/Myb domain
CDDcd001676.88E-101769No hitNo description
PROSITE profilePS5129425.90670124IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.8E-2673124IPR009057Homeodomain-like
SMARTSM007172.7E-1574122IPR001005SANT/Myb domain
PfamPF002491.2E-1475119IPR001005SANT/Myb domain
CDDcd001675.71E-1077117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MGRHSCCYKQ KLRKGLWSPE EDEKLLNYIT RHGHGCWSSV PKLAGFVFLI SSRLQRCGKS  60
CRLRWINYLR PDLKRGAFSQ DEESLIIELH AALGNRWSQI ATRLPGRTDN EIKNFWNSCL  120
KKKLRRKGID PTTHKPIISE LQTHNVIDQK LTSLNTSEVV KSTASINNHD QSMVVLSQTG  180
PWWYPATTTT GNQNAEFCFS SSSTQTVSDQ IVSLISSMST SSSPTPMTSN FNPIPNNWEL  240
NYCNNTVPSH SNSIYSAFFG NHYTEATQIM NTNNNNNILL DQHPHQDMKS WAPEILHYTD  300
HNQSSETGFE AEVKPDIAKY YWRSISSSPS PNERAATLLH DADVEFYGRS LQKPNIMAFD  360
QKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-26121245108B-MYB
1h8a_C6e-261112424128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0997770.0AY099777.1 Arabidopsis thaliana transcription factor ATMYB4 (At5g26655) mRNA, complete cds.
GenBankAY5196290.0AY519629.1 Arabidopsis thaliana MYB transcription factor (At5g26660) mRNA, complete cds.
GenBankBT0087400.0BT008740.1 Arabidopsis thaliana At5g26655 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022570436.10.0transcription factor MYB86-like
SwissprotQ8LPH60.0MYB86_ARATH; Transcription factor MYB86
TrEMBLA0A397Z1X20.0A0A397Z1X2_BRACM; Uncharacterized protein
STRINGBo7g095130.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.10.0myb domain protein 86