PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC649_p5
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family CPP
Protein Properties Length: 543aa    MW: 60628.9 Da    PI: 6.5006
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC649_p5genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR421.9e-13413450338
        TCR   3 kkgCnCkkskClkkYCeCfaagkkCsee..CkCedCkN 38 
                k +CnC+kskCl+++CeCfaag++Cs e  C C +C+N
  RrC649_p5 413 KGRCNCEKSKCLQLFCECFAAGVYCSTEppCLCINCHN 450
                568***********************9989*******9 PP
2TCR40.55.3e-13501540241
        TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                +++gCnCkkskC +kYCeCf+ g+ Cs +C+C +C Nk++
  RrC649_p5 501 HRRGCNCKKSKCSNKYCECFQGGVCCSTRCRCIECGNKNQ 540
                789**********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM006670.015840IPR006594LIS1 homology motif
PROSITE profilePS508968.959840IPR006594LIS1 homology motif
PROSITE profilePS508969.54978110IPR006594LIS1 homology motif
SMARTSM006677.9E-478110IPR006594LIS1 homology motif
PfamPF085131.8E-782105IPR006594LIS1 homology motif
SMARTSM011143.8E-10411454IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163430.708412540IPR005172CRC domain
PfamPF036381.6E-10415450IPR005172CRC domain
SMARTSM011147.7E-10500541IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.7E-9503538IPR005172CRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MAQSDSEADK MLDVYIYDHL VKKKLHNIAK SFMTEGKVSP DHVGKAIDTP GGLLFEWWSM  60
FWDISIAKTK QNRSESAVEQ GLNVYIYDYL VKKKLYHTAE SFMPEVKSPP GHISINTPGA  120
FLSKWWFVFW EFFIARVTEK HYESVAQAQQ GEQMKQPNPV NTVASQPSMD AGTIHHGQMV  180
HGRYQGGVSP ALQSRTQQTP ENNSGVNLGA SPRQQDPLLS QQNNHKRART GNTVGPFNSQ  240
PSTPLTHTPN EGVAITGDMQ HVNNMPKGPV MYGSDAIGGL ASSANQPMCD DMEAFEDLED  300
LEDKAEWFLP QVDGNLHQSD MESFGALEDV DIESVFTAIN WNPSEFIERQ QAKEQEQMKQ  360
PNPMNTETSQ PHMDHGEMVH GNHQGGSVLA SLQQLNPRTQ QTPFEAGDGE SRKGRCNCEK  420
SKCLQLFCEC FAAGVYCSTE PPCLCINCHN IPIYKEDVLN SRKKIESRNP LAFAPKIISR  480
SSDPVQETRD DASKTPASGH HRRGCNCKKS KCSNKYCECF QGGVCCSTRC RCIECGNKNQ  540
ERK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A9e-1141653714120Protein lin-54 homolog
5fd3_B9e-1141653714120Protein lin-54 homolog
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018476324.10.0PREDICTED: uncharacterized protein LOC108847556
RefseqXP_018476325.10.0PREDICTED: uncharacterized protein LOC108847556
RefseqXP_018476326.10.0PREDICTED: uncharacterized protein LOC108847556
RefseqXP_018476327.10.0PREDICTED: uncharacterized protein LOC108847556
TrEMBLA0A0D3B4J80.0A0A0D3B4J8_BRAOL; Uncharacterized protein
STRINGBo3g026760.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1948756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.13e-47TESMIN/TSO1-like CXC 2