PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC6394_p2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | LBD | ||||||||
Protein Properties | Length: 273aa MW: 28815 Da PI: 7.6879 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127.3 | 7.1e-40 | 53 | 154 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aCk+lrrkC+++C++ap+f ++q +++fa+vhk+FGasnv+kll+++p ++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq+++l+ael++++ RrC6394_p2 53 PCGACKFLRRKCVSGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLHHIPVNRRHDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAELSVVQ 151 7***********************9989**********************************************************************9 PP DUF260 99 eel 101 ++l RrC6394_p2 152 SQL 154 985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.216 | 52 | 154 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.6E-39 | 53 | 151 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:1900150 | Biological Process | regulation of defense response to fungus |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MADQQRSGHN SSDSRRKSAA GRRNSQHTTT SSLASSGGAM ATAATTGTGT VSPCGACKFL 60 RRKCVSGCIF APHFGSDQGA ARFAAVHKVF GASNVSKLLH HIPVNRRHDA VVTISYEAQA 120 RLSDPVYGCV STILALQQQV ASLQAELSVV QSQLINSRVA MANVMQQQQN HHQQQLVVMQ 180 QPEYSNNSSA STTLAGAAMN SFTATAEAAA AVSYDVMAPA NLEHSLQPVP RHQLGSGNQH 240 EDEEESGTDF SVAVGSTALA AEVIFPAEGF HRI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-40 | 43 | 156 | 1 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-40 | 43 | 156 | 1 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473854 | 0.0 | AB473854.1 Arabidopsis thaliana ASL21 mRNA for ASYMMETRIC LEAVES2-like 21 protein, complete cds. | |||
GenBank | AK118291 | 0.0 | AK118291.1 Arabidopsis thaliana At3g03760 mRNA for unknown protein, complete cds, clone: RAFL19-58-F13. | |||
GenBank | BT008589 | 0.0 | BT008589.1 Arabidopsis thaliana clone U50874 unknown protein (At3g03760) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018440564.1 | 0.0 | PREDICTED: LOB domain-containing protein 20 | ||||
Swissprot | Q9SRV3 | 1e-147 | LBD20_ARATH; LOB domain-containing protein 20 | ||||
TrEMBL | A0A291LR04 | 1e-163 | A0A291LR04_BRARR; Transcription factor LBD20 | ||||
TrEMBL | A0A398AU89 | 1e-163 | A0A398AU89_BRACM; Uncharacterized protein | ||||
TrEMBL | M4F5T0 | 1e-163 | M4F5T0_BRARP; Uncharacterized protein | ||||
STRING | Bra036436.1-P | 1e-164 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 1e-106 | LOB domain-containing protein 20 |